Browse Element(s) Details


OsAffx.3694.1.S1_at

Description tigr:9632.m00046
TID=OsAffx.3694.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0146011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01410NANA4+279515..282695hypothetical protein
LOC_Os04g01420OsAffx.13609.1.S1_at11/114+284424..285159hypothetical protein
LOC_Os04g01439OsAffx.13610.1.S1_at8/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01439Os.7307.3.S1_x_at2/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01460OsAffx.3694.1.S1_at11/114+305560..306283hypothetical protein
LOC_Os04g01470Os.23187.1.S1_at8/114+307102..309702O-methyltransferase family protein, expressed
LOC_Os04g01480Os.50217.1.S1_at11/114+312797..319537zinc finger family protein, putative, expressed
LOC_Os04g01490Os.7825.1.S1_at11/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01490Os.57170.1.S1_at1/114+324341..327600Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3694.1.S1_at--1032--10311Chr04:306215..306239 (25 bp)
TTCCCCTGAATTGACCTTGGGAGAC
LOC_Os04g01460
OsAffx.3694.1.S1_at--179--10731Chr04:306205..306229 (25 bp)
TTGACCTTGGGAGACGATGTAGACT
LOC_Os04g01460
OsAffx.3694.1.S1_at--870--5991Chr04:306195..306219 (25 bp)
GAGACGATGTAGACTCCAACCATAG
LOC_Os04g01460
OsAffx.3694.1.S1_at--182--8751Chr04:306188..306212 (25 bp)
TGTAGACTCCAACCATAGTCGAGGG
LOC_Os04g01460
OsAffx.3694.1.S1_at--1014--6911Chr04:306154..306178 (25 bp)
GTAGCTGGTGGCTCGGGCGTAGGAG
LOC_Os04g01460
OsAffx.3694.1.S1_at--920--7391Chr04:306129..306153 (25 bp)
GTGATGATAGCAGTGCCGGTCGGAA
LOC_Os04g01460
OsAffx.3694.1.S1_at--641--4072Chr01:21494478..21494592 (24 bp)
CGAGCAGCACCGACGGAGAAGATGA
NONE
OsAffx.3694.1.S1_at--468--5351Chr04:306070..306094 (25 bp)
GAAGATGACGGCAGAAATCCGCCCT
LOC_Os04g01460
OsAffx.3694.1.S1_at--863--5731Chr04:306064..306088 (25 bp)
GACGGCAGAAATCCGCCCTCCTTGT
LOC_Os04g01460
OsAffx.3694.1.S1_at--532--3751Chr04:305998..306022 (25 bp)
CTCTCTCGGTCAGGGCACTATGATG
LOC_Os04g01460
OsAffx.3694.1.S1_at--677--5111Chr04:305984..306008 (25 bp)
GCACTATGATGTGGGCAGCGAGATA
LOC_Os04g01460
Target Sequence 
TTCCCCTGAATTGACCTTGGGAGACGATGTAGACTCCAACCATAGTCGAGGGGACCATGGTGTAGCTGGTGGCTCGGGCG
TAGGAGGTGATGATAGCAGTGCCGGTCGGAAGAGGTGGAGAGGCCTGGCGAGCAGCACCGACGGAGAAGATGACGGCAGA
AATCCGCCCTCCTTGTCACCTACCAAGCCAGATCCACCCTTCTTCCACCATCGCCACCTCTCTCGGTCAGGGCACTATGA
TGTGGGCAGCGAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis