Browse Element(s) Details


OsAffx.13609.1.S1_at

Description tigr:9632.m00042
TID=OsAffx.13609.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0142011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01370OsAffx.11259.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.22850.1.S1_x_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.20615.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.30486.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01380OsAffx.13607.1.S1_at11/114+268610..271182hypothetical protein
LOC_Os04g01390NANA4+271820..273118hypothetical protein
LOC_Os04g01400OsAffx.24744.4.A1_at1/114+273634..278329retrotransposon protein, putative, unclassified
LOC_Os04g01400OsAffx.22699.1.S1_x_at1/114+273634..278329retrotransposon protein, putative, unclassified
LOC_Os04g01410NANA4+279515..282695hypothetical protein
LOC_Os04g01420OsAffx.13609.1.S1_at11/114+284424..285159hypothetical protein
LOC_Os04g01439OsAffx.13610.1.S1_at8/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01439Os.7307.3.S1_x_at2/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01460OsAffx.3694.1.S1_at11/114+305560..306283hypothetical protein
LOC_Os04g01470Os.23187.1.S1_at8/114+307102..309702O-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13609.1.S1_at--1134--391Chr04:285027..285051 (25 bp)
ATCATGATCACTGACCTAGATGTCA
LOC_Os04g01420
OsAffx.13609.1.S1_at--902--471Chr04:284998..285022 (25 bp)
ATCGGCTAACCTGCCTAGCTTGGAT
LOC_Os04g01420
OsAffx.13609.1.S1_at--600--9791Chr04:284992..285016 (25 bp)
TAACCTGCCTAGCTTGGATACCCAA
LOC_Os04g01420
OsAffx.13609.1.S1_at--1139--4951Chr04:284890..284966 (25 bp)
GCATAGGTGGGAACATGCAGCCTTT
LOC_Os04g01420
OsAffx.13609.1.S1_at--226--2391Chr04:284808..284832 (25 bp)
AAACTGGCAACGTGTAGCTGAGAAT
LOC_Os04g01420
OsAffx.13609.1.S1_at--836--4751Chr04:284717..284741 (25 bp)
GCTGCAATAAACAAGATAGTCTCTG
LOC_Os04g01420
OsAffx.13609.1.S1_at--931--10051Chr04:284701..284725 (25 bp)
TAGTCTCTGGAAAATCAATTGGCAC
LOC_Os04g01420
OsAffx.13609.1.S1_at--1008--3291Chr04:284654..284678 (25 bp)
CAAATCTGGTTGAACCTGCACACCA
LOC_Os04g01420
OsAffx.13609.1.S1_at--281--1711Chr04:284633..284657 (25 bp)
ACCAGGATGGTTGCCGATCGACCAG
LOC_Os04g01420
OsAffx.13609.1.S1_at--54--2911Chr04:284553..284577 (25 bp)
AAGGAGTACTACACGCCGATGTATG
LOC_Os04g01420
OsAffx.13609.1.S1_at--751--5891Chr04:284480..284504 (25 bp)
GAGCTCTTCAAAGAATGGTTCAACA
LOC_Os04g01420
Target Sequence 
ATCATGATCACTGACCTAGATGTCACCTCATCGGCTAACCTGCCTAGCTTGGATACCCAACTCACCCATGAGTTCAAAAC
CAGGAGCATAGGTGGGAACATGCAGCCTTTCCTTATGATGTGGCTTGAAAAATTCCTGTTCTGCGGTCCAAGCTGTGGTC
CTACTGCAAACTGGCAACGTGTAGCTGAGAATTTGGTAGAAAAGAAGCATTTCCCTCTTGGAAAGTATCTGCTAGGCTAC
CTATATCAAACTCTCAATGCTGCAATAAACAAGATAGTCTCTGGAAAATCAATTGGCACAGGGGGTCCATGGTGGTTACT
TCAAATCTGGTTGAACCTGCACACCAGGATGGTTGCCGATCGACCAGCGCTAGCCGATGCAAATTTTCCAAGGTTTGAGC
CGATCATCAGAGATGATGGAGAAAGGAGTACTACACGCCGATGTATGTCCTTCGAAGAAGCAGCATCGGTCAGTACCGCA
TCCAAGTTATCGGCTGAGCTCTTCAAAGAATGGTTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis