Browse Element(s) Details


OsAffx.13607.1.S1_at

Description tigr:9632.m00038
TID=OsAffx.13607.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0138011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01340OsAffx.10458.1.S1_at7/114+242538..245183retrotransposon protein, putative, LINE subclass
LOC_Os04g01354Os.53952.1.S1_at11/114+249358..253546Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g01354OsAffx.32197.1.A1_x_at5/114+249358..253546Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g01354OsAffx.7027.1.S1_at3/114+249358..253546Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g01370OsAffx.11259.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.22850.1.S1_x_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.20615.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.30486.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01380OsAffx.13607.1.S1_at11/114+268610..271182hypothetical protein
LOC_Os04g01390NANA4+271820..273118hypothetical protein
LOC_Os04g01400OsAffx.24744.4.A1_at1/114+273634..278329retrotransposon protein, putative, unclassified
LOC_Os04g01400OsAffx.22699.1.S1_x_at1/114+273634..278329retrotransposon protein, putative, unclassified
LOC_Os04g01410NANA4+279515..282695hypothetical protein
LOC_Os04g01420OsAffx.13609.1.S1_at11/114+284424..285159hypothetical protein
LOC_Os04g01439OsAffx.13610.1.S1_at8/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01439Os.7307.3.S1_x_at2/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13607.1.S1_at--384--10311Chr04:269154..269178 (25 bp)
TTTCAAATCGGCTAGAAGGTTCGTT
LOC_Os04g01380
OsAffx.13607.1.S1_at--527--10571Chr04:269135..269159 (25 bp)
TTCGTTGGAGACTCTGGTAACCAGC
LOC_Os04g01380
OsAffx.13607.1.S1_at--556--6491Chr04:269095..269119 (25 bp)
GATAGACTCCATGAAATAGATGACA
LOC_Os04g01380
OsAffx.13607.1.S1_at--94--2791Chr04:268990..269014 (25 bp)
AAGAGGATTGCTGATCGACGCGAAA
LOC_Os04g01380
OsAffx.13607.1.S1_at--1--4851Chr04:268939..268963 (25 bp)
GCTAACAGAGCTTCCATCAATAAAG
LOC_Os04g01380
OsAffx.13607.1.S1_at--1041--3071Chr04:268846..268870 (25 bp)
AATCAGAAGATACAGCTCCTAGCCG
LOC_Os04g01380
OsAffx.13607.1.S1_at--840--6471Chr04:268838..268862 (25 bp)
GATACAGCTCCTAGCCGAACTAGAG
LOC_Os04g01380
OsAffx.13607.1.S1_at--1041--6731Chr04:268736..268760 (25 bp)
GTTAAAGACTTCTATCAAACACTTG
LOC_Os04g01380
OsAffx.13607.1.S1_at--247--371Chr04:268723..268747 (25 bp)
ATCAAACACTTGACTGAGCTGACCA
LOC_Os04g01380
OsAffx.13607.1.S1_at--1071--4031Chr04:268686..268710 (25 bp)
CGATCTCTAGCACCGATGCAACTGA
LOC_Os04g01380
OsAffx.13607.1.S1_at--1089--3351Chr04:268676..268700 (25 bp)
CACCGATGCAACTGATGCCCAAATA
LOC_Os04g01380
Target Sequence 
TTTCAAATCGGCTAGAAGGTTCGTTGGAGACTCTGGTAACCAGCTGTGGGTCTATTAGAGATAGACTCCATGAAATAGAT
GACAAAATCCCAGATGAGCTAGCCGATGCCATTACTCCAACGGCATACCTTGAGCAACATCGGCTTAAGCTTGAAAAAGC
TCAGAAGAGGATTGCTGATCGACGCGAAAGAAGAGACCTTGAAGCAACCATCCAAGCTAACAGAGCTTCCATCAATAAAG
AAAAGGCTAAGCTGGATGAACTGGAGGCTGGTCCGAGTGCAACTCAAGCAAACATTGATCGGCTGAATAATCAGAAGATA
CAGCTCCTAGCCGAACTAGAGCAATGCAATGCACAACTTGCTCTTGAACAAGCAAAGCTTGCCGATTTGCCAAAAGCCAT
TGAAGATCAAAAATCCAAGTTAAAGACTTCTATCAAACACTTGACTGAGCTGACCAAATCTCTGAAGCCGATCTCTAGCA
CCGATGCAACTGATGCCCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis