Browse Element(s) Details


OsAffx.13610.1.S1_at

Description tigr:9632.m00044
TID=OsAffx.13610.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g014398/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01370OsAffx.11259.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.22850.1.S1_x_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.20615.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.30486.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01380OsAffx.13607.1.S1_at11/114+268610..271182hypothetical protein
LOC_Os04g01390NANA4+271820..273118hypothetical protein
LOC_Os04g01400OsAffx.24744.4.A1_at1/114+273634..278329retrotransposon protein, putative, unclassified
LOC_Os04g01400OsAffx.22699.1.S1_x_at1/114+273634..278329retrotransposon protein, putative, unclassified
LOC_Os04g01410NANA4+279515..282695hypothetical protein
LOC_Os04g01420OsAffx.13609.1.S1_at11/114+284424..285159hypothetical protein
LOC_Os04g01439OsAffx.13610.1.S1_at8/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01439Os.7307.3.S1_x_at2/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01460OsAffx.3694.1.S1_at11/114+305560..306283hypothetical protein
LOC_Os04g01470Os.23187.1.S1_at8/114+307102..309702O-methyltransferase family protein, expressed
LOC_Os04g01480Os.50217.1.S1_at11/114+312797..319537zinc finger family protein, putative, expressed
LOC_Os04g01490Os.7825.1.S1_at11/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01490Os.57170.1.S1_at1/114+324341..327600Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13610.1.S1_at--301--8971Chr04:301027..301050 (24 bp)
TGAAAAAGCTTGGTCTCGCGTCGCC
NONE
OsAffx.13610.1.S1_at--106--5631Chr04:300943..300967 (25 bp)
GACAAAGCCGCATGGCCGCAAGAAT
NONE
OsAffx.13610.1.S1_at--909--4211Chr04:300936..300960 (25 bp)
CCGCATGGCCGCAAGAATGGTGACG
NONE
OsAffx.13610.1.S1_at--515--7271Chr04:300901..300925 (25 bp)
GTCCACCTCATGCTTGGGCCAAGCG
LOC_Os04g01439
OsAffx.13610.1.S1_at--1004--9611Chr04:300894..300918 (25 bp)
TCATGCTTGGGCCAAGCGAGCTGTT
LOC_Os04g01439
OsAffx.13610.1.S1_at--134--1091Chr04:300840..300864 (25 bp)
AGTGGCGGAGCCTAGGCCATGGCAG
LOC_Os04g01439
OsAffx.13610.1.S1_at--126--5011Chr04:300819..300843 (25 bp)
GCAGGCAGCCAGGACATGCTTGCTA
LOC_Os04g01439
OsAffx.13610.1.S1_at--309--4351Chr04:300811..300835 (25 bp)
CCAGGACATGCTTGCTAGGGAGCGA
LOC_Os04g01439
OsAffx.13610.1.S1_at--398--4051Chr04:300789..300813 (25 bp)
CGAGGCTGGCCGAATTAACGTTGGT
LOC_Os04g01439
OsAffx.13610.1.S1_at--55--3931Chr04:300784..300808 (25 bp)
CTGGCCGAATTAACGTTGGTGTCGA
LOC_Os04g01439
OsAffx.13610.1.S1_at--909--7211Chr04:300764..300788 (25 bp)
GTCGAGGCTGGCACACGGGAAGAGA
LOC_Os04g01439
Target Sequence 
TGAAAAAGCTTGGTCTCGCGTCGCCCTCCACCACGGGCGGCTCGGGAGGCGACAAGCGCCTCCACCACCGCCCGAGCGGC
CGCCGACAAAGCCGCATGGCCGCAAGAATGGTGACGGCGGGGCTTCGTCCACCTCATGCTTGGGCCAAGCGAGCTGTTCG
GGGTGGCGCGTTGGTGGTGGTGCCGGCAGTGGCGGAGCCTAGGCCATGGCAGGCAGCCAGGACATGCTTGCTAGGGAGCG
AGGCTGGCCGAATTAACGTTGGTGTCGAGGCTGGCACACGGGAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis