Browse Element(s) Details


Os.23213.1.S1_at

Description gb:AK073229.1
DB_XREF= gi:32983252
TID=Os.23213.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033020D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033020D07, full insert sequence.
FL= gb:AK073229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g401101/11Nop14-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40080OsAffx.25445.1.S1_at5/113+22217138..22221790GRAS family transcription factor containing protein, expressed
LOC_Os03g40084NANA3+22223436..22224648hypothetical protein
LOC_Os03g40090OsAffx.22693.1.S1_x_at11/113+22225901..22227021hypothetical protein
LOC_Os03g40100Os.8785.1.S1_at11/113+22236313..22239261ACT domain containing protein, putative, expressed
LOC_Os03g40110Os.20699.2.S1_x_at11/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40110Os.20699.1.S1_at11/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40110Os.23213.1.S1_at1/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40120NANA3+22249998..22250516hypothetical protein
LOC_Os03g40130OsAffx.25446.1.S1_at11/113+22253199..22254759universal stress protein family protein
LOC_Os03g40150Os.33624.3.S1_x_at11/113+22264996..22268465hypothetical protein
LOC_Os03g40150OsAffx.25216.1.S1_x_at7/113+22264996..22268465hypothetical protein
LOC_Os03g40160OsAffx.25217.1.S1_x_at11/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40160OsAffx.25217.2.S1_x_at4/113+22269012..22276271transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23213.1.S1_at--5--8052Chr09:5761636..5761660 (25 bp)
GGAGTATCTCCTTTGTATGCACCAA
NONE
Os.23213.1.S1_at--44--6274Chr05:12277348..12277372 (25 bp)
GATGTGTTTTCTCTGGCATTTTGAA
NONE
Os.23213.1.S1_at--1056--92Chr09:5761816..5761840 (25 bp)
ATTCTATGGCCGGTTCTGTTACTTC
NONE
Os.23213.1.S1_at--1076--10352Chr09:5761897..5761921 (25 bp)
TTTTTAAGGCATTTGGTTTCTCAGG
NONE
Os.23213.1.S1_at--689--9272Chr09:5762022..5762046 (25 bp)
TCCTGGTGCTGTTAGAGAGGCCAAT
NONE
Os.23213.1.S1_at--44--1312Chr09:5762037..5762061 (25 bp)
AGAGGCCAATCTATTCAGGTCCAGC
NONE
Os.23213.1.S1_at--943--10512Chr09:5762050..5762074 (25 bp)
TTCAGGTCCAGCAGTTTACATCAAG
NONE
Os.23213.1.S1_at--1098--6292Chr09:5762074..5762098 (25 bp)
GATGATGTTCTTTCTAGCGATGCAT
NONE
Os.23213.1.S1_at--980--1612Chr09:5762089..5762113 (25 bp)
AGCGATGCATGTAGTGACCATTGAT
NONE
Os.23213.1.S1_at--780--732Chr09:5762112..5762136 (25 bp)
ATGTTTCGATTGCTTGAGGCGACCC
NONE
Os.23213.1.S1_at--407--892Chr09:5762128..5762152 (25 bp)
AGGCGACCCTCTTTGTAATTGTGAA
NONE
Target Sequence 
GGAGTATCTCCTTTGTATGCACCAACCAATTTTGGAGCTCCAGACAATGAAACGATAGCTTCATAATATCCATGAAAAAG
TGCTATTGGATGAATCCAGTAAAGATGTGTTTTCTCTGGCATTTTGAATATTGAAGTGTGCTGATGACTTTGTAATTACT
AATAATGATGCAATGCATAAATTCTATGGCCGGTTCTGTTACTTCTTTTTATTTGGACGTAATTTGCTTGAAAGATTTTT
GATGTGGCTAAAGGAGAAATTTTTTTAAGGCATTTGGTTTCTCAGGAGTTTAGGAGTTGGAACCATGCAAACATGCCTCA
TGCTAATGTCTTCCTGAGCTTTCAGAAATCGAAGTTATTTCTAGCTTAAGATGATGTTGGAGCTGATCCTGGTGCTGTTA
GAGAGGCCAATCTATTCAGGTCCAGCAGTTTACATCAAGATGATGTTCTTTCTAGCGATGCATGTAGTGACCATTGATGT
TTCGATTGCTTGAGGCGACCCTCTTTGTAATTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis