Browse Element(s) Details


Os.23266.1.S1_at

Description gb:AK102287.1
DB_XREF= gi:32987496
TID=Os.23266.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089J21, full insert sequence.
FL= gb:AK102287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2490011/11Ankyrin protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24870OsAffx.17881.1.S1_at11/119+14843149..14846843hypothetical protein
LOC_Os09g24880NANA9+14859622..14860185retrotransposon protein, putative, unclassified
LOC_Os09g24890NANA9+14863763..14864002hypothetical protein
LOC_Os09g24900Os.23266.1.S1_at11/119+14866405..14869920Ankyrin protein kinase, putative, expressed
LOC_Os09g24910Os.5137.1.S1_at11/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24910OsAffx.22606.1.S1_at1/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24924Os.22767.1.S1_at10/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.30009.1.S1_at8/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.6233.1.S1_at3/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924Os.47306.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.9066.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24940OsAffx.17882.1.S1_at11/119+14894144..14894926hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23266.1.S1_at--826--2091Chr09:14869356..14869380 (25 bp)
ACATCCTACTGGAGATGGACCGCGT
LOC_Os09g24900
Os.23266.1.S1_at--58--3871Chr09:14869382..14869406 (25 bp)
CTGAGGCCAGAAGGCGCCGTCATAA
LOC_Os09g24900
Os.23266.1.S1_at--130--3411Chr09:14869389..14869413 (25 bp)
CAGAAGGCGCCGTCATAATGAGGGA
LOC_Os09g24900
Os.23266.1.S1_at--907--2171Chr09:14869467..14869491 (25 bp)
ACACGAGGCTGGTCGATCACGAGGA
LOC_Os09g24900
Os.23266.1.S1_at--209--9391Chr09:14869479..14869503 (25 bp)
TCGATCACGAGGACGGCCCCATGGT
LOC_Os09g24900
Os.23266.1.S1_at--158--7791Chr09:14869513..14869537 (25 bp)
GGTGCTGTATGCTGTGAAGCAGTAC
LOC_Os09g24900
Os.23266.1.S1_at--891--3611Chr09:14869827..14869851 (25 bp)
CTTGTCAGTTGTCACGGTGATTTCT
LOC_Os09g24900
Os.23266.1.S1_at--1047--7731Chr09:14869842..14869866 (25 bp)
GGTGATTTCTTGGTTTCGCGTCTTC
LOC_Os09g24900
Os.23266.1.S1_at--541--10291Chr09:14869855..14869879 (25 bp)
TTTCGCGTCTTCTGTAAGCCGCTAT
LOC_Os09g24900
Os.23266.1.S1_at--482--2671Chr09:14869870..14869894 (25 bp)
AAGCCGCTATGTAATCAGTTTGCCT
LOC_Os09g24900
Os.23266.1.S1_at--990--3071Chr09:14869882..14869906 (25 bp)
AATCAGTTTGCCTACAGAAGAGAAG
LOC_Os09g24900
Target Sequence 
ACATCCTACTGGAGATGGACCGCGTCCTGAGGCCAGAAGGCGCCGTCATAATGAGGGACGATGTCGATATCCTGACGAAG
GTGAACAGGCTCGCCCTCGGCATGAAATGGNACACGAGGCTGGTCGATCACGAGGACGGCCCCATGGTGCGTGAGAAGGT
GCTGTATGCTGTGAAGCAGTACTGGGTAGGCGGAAACCAGACTGCAGCAGCTGCAGCATGAAGCAGGCGTAAATCCTAAC
ACAAAAGATGGAAGAACTNTGCAATCCATCCTGAACTGACTTCCAGGAAANGTAAGATACGGGAGTCATTTAGTGAGAGG
CCAGGTGATCTTGTCGGAGTGGCGATGAAGAAGCAACCCGGGCTTTNTTGGTTGCTNTGATGATCGGCNGGCGTATATTG
TTGTAACAATTTTGTAATTTCATTTGTCACTCTCTAGTGTTAACTGGTTACGATGCTTAATTCAAGGTTTGCTTGTCAGT
TGTCACGGTGATTTCTTGGTTTCGCGTCTTCTGTAAGCCGCTATGTAATCAGTTTGCCTACAGAAGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis