Browse Element(s) Details


Os.23289.1.S1_at

Description gb:AK064399.1
DB_XREF= gi:32974417
TID=Os.23289.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23289 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G12, full insert sequence.
FL= gb:AK064399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0844011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08410Os.49237.1.S1_at11/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08410OsAffx.14231.1.S1_at1/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08420Os.53275.1.S1_at11/115+4571250..4572060expressed protein
LOC_Os05g08430OsAffx.14301.1.S1_at7/115+4578998..4586348Boron transporter-like protein 2, putative, expressed
LOC_Os05g08440Os.23289.1.S1_at11/115+4588889..4590693F-box domain containing protein, expressed
LOC_Os05g08450Os.25157.1.A1_at11/115+4591644..4593202expressed protein
LOC_Os05g08460Os.25157.1.A1_at1/115+4598868..4601064F-box domain containing protein
LOC_Os05g08470NANA5+4603276..4603910hypothetical protein
LOC_Os05g08480Os.5649.1.S1_at11/115+4604454..4606307Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g08490NANA5+4613459..4614384Cytokinin-O-glucosyltransferase 1, putative
LOC_Os05g08500Os.35344.18.S1_x_at9/115+4615152..4621207transposon protein, putative, Mutator sub-class
LOC_Os05g08500Os.35344.3.S1_x_at8/115+4615152..4621207transposon protein, putative, Mutator sub-class
LOC_Os05g08500OsAffx.22940.5.S1_x_at3/115+4615152..4621207transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23289.1.S1_at--443--991Chr05:4590101..4590125 (25 bp)
AGGATGAACCCTGATGACTGCACTC
LOC_Os05g08440
Os.23289.1.S1_at--804--8031Chr05:4590237..4590261 (25 bp)
GGAGTTATTGCGAGCCACCATATCT
LOC_Os05g08440
Os.23289.1.S1_at--428--1731Chr05:4590253..4590277 (25 bp)
ACCATATCTTCCATATATTCCCTTG
LOC_Os05g08440
Os.23289.1.S1_at--179--3071Chr05:4590309..4590333 (25 bp)
AATCTACCGTACTGGATGGCAGCTC
LOC_Os05g08440
Os.23289.1.S1_at--982--9531Chr05:4590332..4590356 (25 bp)
TCTACCTGTGTCAATCTTTTCCGAT
LOC_Os05g08440
Os.23289.1.S1_at--79--6171Chr05:4590386..4590410 (25 bp)
GAGGATTGAGCCACTTGGACTGCCA
LOC_Os05g08440
Os.23289.1.S1_at--33--4411Chr05:4590407..4590431 (25 bp)
GCCACAGCATTGTCTTATCCATCAA
LOC_Os05g08440
Os.23289.1.S1_at--861--7891Chr05:4590553..4590577 (25 bp)
GGTTCTTGCTTCATGTTACTTTTGG
LOC_Os05g08440
Os.23289.1.S1_at--465--191Chr05:4590587..4590611 (25 bp)
ATTTCACTCCTGTAACCTGACTTTA
LOC_Os05g08440
Os.23289.1.S1_at--138--271Chr05:4590623..4590647 (25 bp)
ATATGTGTGTACTCAGTGACTGCCA
LOC_Os05g08440
Os.23289.1.S1_at--1081--7352Chr09:1930245..1930264 (20 bp)
GTGACTGCCATTTTCGGTCTAACTT
NONE
Target Sequence 
AGGATGAACCCTGATGACTGCACTCTTGTCTGNATCGAAGGACGTAAGATGTTTTTCATGTTTTATGACTATGTTCATTG
TATACTCACGTCATATGAAATGGACAGTGGGGAAGTACGATGTCTNAGTCGTCCTCGGAGTTATTGCGAGCCACCATATC
TTCCATATATTCCCTTGTTCTTGGAATCATTAGCAGATGGGCCCNAATAATCTACCGTACTGGATGGCAGCTCTACCTGT
GTCAATCTTTTCCGATGATATGGGAACTAGATCACCAATTGCTACGAGGATTGAGCCACTTGGACTGCCACAGCATTGTC
TTATCCATCAATAGCATGATATATATGCTTTTCTTTGNTTCTGAGATTGACACATTTCTAATGCTTTGTGAAACAGTACT
ATGTTCTTAAGTTGGATGGNAGTATCAATANCAAAGTTCGGTGTGGTAAAAAAGGTTCTTGCTTCATGTTACTTTTGGTT
GTGCTTGATTTCACTCCTGTAACCTGACTTTATGGTGCTAGTTATATGTGTGTACTCAGTGACTGCCATTTTCGGTCTAA
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis