Browse Element(s) Details


Os.53275.1.S1_at

Description gb:AK071729.1
DB_XREF= gi:32981752
TID=Os.53275.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110H11, full insert sequence.
FL= gb:AK071729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0842011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08370Os.10183.1.S1_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08370Os.10183.1.S2_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08380NANA5+4553233..4553811hypothetical protein
LOC_Os05g08390OsAffx.26787.1.S1_at11/115+4557116..4557638expressed protein
LOC_Os05g08390OsAffx.26787.1.S1_s_at11/115+4557116..4557638expressed protein
LOC_Os05g08400Os.54235.1.S1_at11/115+4559350..4562057Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g08410Os.49237.1.S1_at11/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08410OsAffx.14231.1.S1_at1/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08420Os.53275.1.S1_at11/115+4571250..4572060expressed protein
LOC_Os05g08430OsAffx.14301.1.S1_at7/115+4578998..4586348Boron transporter-like protein 2, putative, expressed
LOC_Os05g08440Os.23289.1.S1_at11/115+4588889..4590693F-box domain containing protein, expressed
LOC_Os05g08450Os.25157.1.A1_at11/115+4591644..4593202expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53275.1.S1_at--242--6031Chr05:4571588..4571612 (25 bp)
GAGATGGAGCCCACAGCTCGCGACG
LOC_Os05g08420
Os.53275.1.S1_at--1155--1891Chr05:4571566..4571590 (25 bp)
ACGTCGCCGCGATGGCGTGTATATA
LOC_Os05g08420
Os.53275.1.S1_at--186--7932Chr05:5450470..5450512 (25 bp)
GGATTCGTCTCGTTGCGGAGGAAAT
NONE
Os.53275.1.S1_at--1133--5311Chr05:4571491..4571515 (25 bp)
GAAGGGATCTGGTTTTTAGGATTGA
LOC_Os05g08420
Os.53275.1.S1_at--453--10351Chr05:4571477..4571501 (25 bp)
TTTAGGATTGATCCCTTGCTTCCAT
LOC_Os05g08420
Os.53275.1.S1_at--743--10371Chr05:4571436..4571460 (25 bp)
TTTTCTTGCGTTTTCTCCCGAATTG
LOC_Os05g08420
Os.53275.1.S1_at--326--4631Chr05:4571429..4571453 (25 bp)
GCGTTTTCTCCCGAATTGTAATCTC
LOC_Os05g08420
Os.53275.1.S1_at--533--1271Chr05:4571380..4571404 (25 bp)
AGATAGATCTACTCGCTTGTGGCGA
LOC_Os05g08420
Os.53275.1.S1_at--691--9351Chr05:4571368..4571392 (25 bp)
TCGCTTGTGGCGAAGTATGATGCAT
LOC_Os05g08420
Os.53275.1.S1_at--949--6912Chr05:5450634..5450657 (24 bp)
GTATGATGCATCAGATCCATTAGGT
NONE
Os.53275.1.S1_at--172--9651Chr05:4571344..4571368 (25 bp)
TCAGATCCATTAGGTTTGTTGTACT
LOC_Os05g08420
Target Sequence 
GAGATGGAGCCCACAGCTCGCGACGTCGCCGCGATGGCGTGTATATAAAATCCGGGGTGGGATTCGTCTCGTTGCGGAGG
AAATTTAGAAGAATTTAGAAGGGATCTGGTTTTTAGGATTGATCCCTTGCTTCCATCCATCTCTGCTTTTTTTTTTCTTG
CGTTTTCTCCCGAATTGTAATCTCGAGATGAAATGTAATCTGGATCTGAGATAGATCTACTCGCTTGTGGCGAAGTATGA
TGCATCAGATCCATTAGGTTTGTTGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis