Browse Element(s) Details


OsAffx.26787.1.S1_s_at

Description tigr:9633.m00755
TID=OsAffx.26787.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY077663 At1g80180F18B13_26
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0839011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08350Os.8122.1.S1_at11/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08350OsAffx.4275.1.S1_at10/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08360Os.53192.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360OsAffx.4276.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360Os.47666.1.S1_at1/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08370Os.10183.1.S1_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08370Os.10183.1.S2_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08380NANA5+4553233..4553811hypothetical protein
LOC_Os05g08390OsAffx.26787.1.S1_at11/115+4557116..4557638expressed protein
LOC_Os05g08390OsAffx.26787.1.S1_s_at11/115+4557116..4557638expressed protein
LOC_Os05g08400Os.54235.1.S1_at11/115+4559350..4562057Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g08410Os.49237.1.S1_at11/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08410OsAffx.14231.1.S1_at1/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08420Os.53275.1.S1_at11/115+4571250..4572060expressed protein
LOC_Os05g08430OsAffx.14301.1.S1_at7/115+4578998..4586348Boron transporter-like protein 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26787.1.S1_s_at--274--3771Chr05:4557450..4557474 (25 bp)
CTCTCGTAGCGTTGGATCCAGTATA
LOC_Os05g08390
OsAffx.26787.1.S1_s_at--81--6951Chr05:4557445..4557469 (25 bp)
GTAGCGTTGGATCCAGTATAAAGGT
LOC_Os05g08390
OsAffx.26787.1.S1_s_at--1157--9031Chr05:4557410..4557434 (25 bp)
TGCAGCGATAGCGTGGAGCGCAGCA
LOC_Os05g08390
OsAffx.26787.1.S1_s_at--275--8511Chr05:4557381..4557405 (25 bp)
TGGCAACCAGGCCTTTCGAACTCGG
LOC_Os05g08390
OsAffx.26787.1.S1_s_at--733--2631Chr05:4557377..4557401 (25 bp)
AACCAGGCCTTTCGAACTCGGCATG
LOC_Os05g08390
OsAffx.26787.1.S1_s_at--276--891Chr05:4557373..4557397 (25 bp)
AGGCCTTTCGAACTCGGCATGTTCC
LOC_Os05g08390
OsAffx.26787.1.S1_s_at--163--10191Chr05:4557368..4557392 (25 bp)
TTTCGAACTCGGCATGTTCCTCCTG
LOC_Os05g08390
OsAffx.26787.1.S1_s_at--510--8271Chr05:4557358..4557382 (25 bp)
GGCATGTTCCTCCTGCTATGGATCC
LOC_Os05g08390
OsAffx.26787.1.S1_s_at--167--10511Chr05:4557330..4557354 (25 bp)
TTCACCCAAAGTTTCCCGCTGCTTG
LOC_Os05g08390
OsAffx.26787.1.S1_s_at--641--431Chr05:4557296..4557320 (25 bp)
ATCTTTAGCAAGGAAGAGCCCTCAC
LOC_Os05g08390
OsAffx.26787.1.S1_s_at--70--10031Chr05:4557291..4557315 (25 bp)
TAGCAAGGAAGAGCCCTCACAGCCT
LOC_Os05g08390
Target Sequence 
CTCTCGTAGCGTTGGATCCAGTATAAAGGTGCAGCGAAGGTGCAGCGATAGCGTGGAGCGCAGCAGGTCTGGCAACCAGG
CCTTTCGAACTCGGCATGTTCCTCCTGCTATGGATCCACCTTCACCCAAAGTTTCCCGCTGCTTGTTCTGCGGCATCTTT
AGCAAGGAAGAGCCCTCACAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26787.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis