Browse Element(s) Details


Os.8122.1.S1_at

Description gb:CB097090
DB_XREF= gi:27921282
DB_XREF=AF53-Rpf_12_G12_T7_044.ab1
CLONE=C0004380
TID=Os.8122.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8122 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0835011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08290NANA5+4499414..4506161retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08300Os.46314.2.S1_x_at1/115+4508176..4511280retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08300Os.10731.2.A1_at1/115+4508176..4511280retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08310OsAffx.16111.1.S1_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08310OsAffx.3363.1.S1_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08310OsAffx.22699.1.S1_x_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08320OsAffx.26785.1.S1_at11/115+4521986..4523234hypothetical protein
LOC_Os05g08330NANA5+4524280..4524820hypothetical protein
LOC_Os05g08340OsAffx.14591.1.S1_at11/115+4526278..4527725hypothetical protein
LOC_Os05g08350Os.8122.1.S1_at11/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08350OsAffx.4275.1.S1_at10/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08360Os.53192.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360OsAffx.4276.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360Os.47666.1.S1_at1/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08370Os.10183.1.S1_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08370Os.10183.1.S2_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08380NANA5+4553233..4553811hypothetical protein
LOC_Os05g08390OsAffx.26787.1.S1_at11/115+4557116..4557638expressed protein
LOC_Os05g08390OsAffx.26787.1.S1_s_at11/115+4557116..4557638expressed protein
LOC_Os05g08400Os.54235.1.S1_at11/115+4559350..4562057Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8122.1.S1_at--38--1131Chr05:4533951..4533975 (25 bp)
AGTGCATTATATATGTGAGCTTGGA
LOC_Os05g08350
Os.8122.1.S1_at--715--4931Chr05:4533933..4533957 (25 bp)
GCTTGGAGATATTTTGACACGGCAT
LOC_Os05g08350
Os.8122.1.S1_at--248--10391Chr05:4533922..4533946 (25 bp)
TTTTGACACGGCATTATCTTCCCTA
LOC_Os05g08350
Os.8122.1.S1_at--341--5631Chr05:4533918..4533942 (25 bp)
GACACGGCATTATCTTCCCTATGTT
LOC_Os05g08350
Os.8122.1.S1_at--716--3671Chr05:4533900..4533924 (25 bp)
CTATGTTCCCTTGTACTCGGAGTCA
LOC_Os05g08350
Os.8122.1.S1_at--214--4291Chr05:4533892..4533916 (25 bp)
CCTTGTACTCGGAGTCACTGGCAAA
LOC_Os05g08350
Os.8122.1.S1_at--848--6091Chr05:4533881..4533905 (25 bp)
GAGTCACTGGCAAATGTACATTGAT
LOC_Os05g08350
Os.8122.1.S1_at--771--51Chr05:4533862..4533886 (25 bp)
ATTGATCATCTTAATTGCATAGCGT
LOC_Os05g08350
Os.8122.1.S1_at--343--10731Chr05:4533848..4533872 (25 bp)
TTGCATAGCGTAATGCTCAGTTTGT
LOC_Os05g08350
Os.8122.1.S1_at--404--3451Chr05:4533831..4533855 (25 bp)
CAGTTTGTTAACTTTAATTATGGCA
LOC_Os05g08350
Os.8122.1.S1_at--326--3591Chr05:4533808..4533832 (25 bp)
CATTGAAGTTAAGTCATCAGTAACC
LOC_Os05g08350
Target Sequence 
AGTGCATTATATATGTGAGCTTGGAGATATTTTGACACGGCATTATCTTCCCTATGTTCCCTTGTACTCGGAGTCACTGG
CAAATGTACATTGATCATCTTAATTGCATAGCGTAATGCTCAGTTTGTTAACTTTAATTATGGCATTGAAGTTAAGTCAT
CAGTAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis