Browse Element(s) Details


OsAffx.4276.1.S1_s_at

Description tigr:9633.m00752
TID=OsAffx.4276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable fibrillarin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0836011/11Fibrillarin-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08310OsAffx.16111.1.S1_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08310OsAffx.3363.1.S1_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08310OsAffx.22699.1.S1_x_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08320OsAffx.26785.1.S1_at11/115+4521986..4523234hypothetical protein
LOC_Os05g08330NANA5+4524280..4524820hypothetical protein
LOC_Os05g08340OsAffx.14591.1.S1_at11/115+4526278..4527725hypothetical protein
LOC_Os05g08350Os.8122.1.S1_at11/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08350OsAffx.4275.1.S1_at10/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08360Os.53192.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360OsAffx.4276.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360Os.47666.1.S1_at1/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08370Os.10183.1.S1_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08370Os.10183.1.S2_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08380NANA5+4553233..4553811hypothetical protein
LOC_Os05g08390OsAffx.26787.1.S1_at11/115+4557116..4557638expressed protein
LOC_Os05g08390OsAffx.26787.1.S1_s_at11/115+4557116..4557638expressed protein
LOC_Os05g08400Os.54235.1.S1_at11/115+4559350..4562057Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g08410Os.49237.1.S1_at11/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08410OsAffx.14231.1.S1_at1/115+4563218..4566986ATP10 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001510biological_processRNA methylation
GO:0006364biological_processrRNA processing
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0003723molecular_functionRNA binding
GO:0030515molecular_functionsnoRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4276.1.S1_s_at--1130--6171Chr05:4538525..4538549 (25 bp)
GAGGACCAATGTAATTCCCATCATT
LOC_Os05g08360
OsAffx.4276.1.S1_s_at--1000--7071Chr05:4538535..4538559 (25 bp)
GTAATTCCCATCATTGAAGATGCTA
LOC_Os05g08360
OsAffx.4276.1.S1_s_at--1119--2791Chr05:4538551..4538575 (25 bp)
AAGATGCTAGGCACCCGGCGAGGTA
LOC_Os05g08360
OsAffx.4276.1.S1_s_at--224--3871Chr05:4540128..4540152 (25 bp)
CTGAGGCTGTGTTTGCTAGTGAAGT
LOC_Os05g08360
OsAffx.4276.1.S1_s_at--283--5291Chr05:4540162..4540186 (25 bp)
GAAGGCAGATCAGTTCAAGCCCTCT
LOC_Os05g08360
OsAffx.4276.1.S1_s_at--298--1671Chr05:4540179..4540203 (25 bp)
AGCCCTCTGAGCAGGTGACGCTGGA
LOC_Os05g08360
OsAffx.4276.1.S1_s_at--1091--2392Chr05:4540285..4540309 (25 bp)
AAACTTGTGGTTGTGAGTGACTGGT
LOC_Os05g08360
OsAffx.4276.1.S1_s_at--936--5731Chr05:4540303..4540327 (25 bp)
GACTGGTGCTAAAATGTAGTGCTGC
LOC_Os05g08360
OsAffx.4276.1.S1_s_at--1110--5111Chr05:4540326..4540350 (25 bp)
GCACAAAACTTTTGGTCTAATTGTT
LOC_Os05g08360
OsAffx.4276.1.S1_s_at--802--9731Chr05:4540343..4540367 (25 bp)
TAATTGTTTTTCACTTGCACCCTGG
LOC_Os05g08360
OsAffx.4276.1.S1_s_at--214--9031Chr05:4540358..4540382 (25 bp)
TGCACCCTGGTTTGTAAGGCTGAAA
LOC_Os05g08360
Target Sequence 
GAGGACCAATGTAATTCCCATCATTGAAGATGCTAGGCACCCGGCGAGGTACCGGATGTTGGTTGGCATGGTTGATGTTA
TCTTCTCTGATGTTGCCCAGCCAGATCAGGCTAGGATCTTAGCCCTCAATGCATCCTACTTCCTGAAGAATGGTGGACAT
TTTGTCATTTCAATCAAGGCGAATTGTATCGACTCCACCATGCCAGCTGAGGCTGTGTTTGCTAGTGAAGTTGAGAAGCT
GAAGGCAGATCAGTTCAAGCCCTCTGAGCAGGTGACGCTGGAGCCTTTCGAGCGTGACCATGCCTGCGTCGTTGGTGGTT
ACAGGATGCCCAAGAAGCAAAAGGGTACATCTTAAGAAGAATAAAACTTGTGGTTGTGAGTGACTGGTGCTAAAATGTAG
TGCTGCACAAAACTTTTGGTCTAATTGTTTTTCACTTGCACCCTGGTTTGTAAGGCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4276.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis