Browse Element(s) Details


Os.10183.1.S2_at

Description gb:AK100188.1
DB_XREF= gi:32985397
TID=Os.10183.1
CNT=40
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10183 (NCBI UniGene Cluster)
UG_TITLE=Subsp. japonica RSW1-like cellulose synthase catalytic subunit mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034D20, full insert sequence.
FL= gb:AK067967.1 gb:AK102140.1 gb:AK099281.1 gb:AK098978.1 gb:AK099228.1 gb:AK067850.1 gb:AK060838.1 gb:AK100188.1 gb:AK060079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0837011/11Cellulose synthase A catalytic subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08310OsAffx.16111.1.S1_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08310OsAffx.3363.1.S1_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08310OsAffx.22699.1.S1_x_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08320OsAffx.26785.1.S1_at11/115+4521986..4523234hypothetical protein
LOC_Os05g08330NANA5+4524280..4524820hypothetical protein
LOC_Os05g08340OsAffx.14591.1.S1_at11/115+4526278..4527725hypothetical protein
LOC_Os05g08350Os.8122.1.S1_at11/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08350OsAffx.4275.1.S1_at10/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08360Os.53192.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360OsAffx.4276.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360Os.47666.1.S1_at1/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08370Os.10183.1.S1_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08370Os.10183.1.S2_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08380NANA5+4553233..4553811hypothetical protein
LOC_Os05g08390OsAffx.26787.1.S1_at11/115+4557116..4557638expressed protein
LOC_Os05g08390OsAffx.26787.1.S1_s_at11/115+4557116..4557638expressed protein
LOC_Os05g08400Os.54235.1.S1_at11/115+4559350..4562057Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g08410Os.49237.1.S1_at11/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08410OsAffx.14231.1.S1_at1/115+4563218..4566986ATP10 protein, expressed
LOC_Os05g08420Os.53275.1.S1_at11/115+4571250..4572060expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009833biological_processprimary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10183.1.S2_at--1111--2791Chr05:4543787..4543811 (25 bp)
AAGATCGATCCTTTCATTTCGCCTA
LOC_Os05g08370
Os.10183.1.S2_at--877--3011Chr05:4543738..4543762 (25 bp)
AATGCGGTGTGAACTGCTGATCGGC
LOC_Os05g08370
Os.10183.1.S2_at--505--9111Chr05:4543724..4543748 (25 bp)
TGCTGATCGGCACCGTTACGAAGAT
LOC_Os05g08370
Os.10183.1.S2_at--672--6791Chr05:4543599..4543623 (25 bp)
GTTATGCCACTGTTTATTAGCTACT
LOC_Os05g08370
Os.10183.1.S2_at--21--151Chr05:4543584..4543608 (25 bp)
ATTAGCTACTTCAGTGCTGGCGCTA
LOC_Os05g08370
Os.10183.1.S2_at--181--4131Chr05:4543564..4543588 (25 bp)
CGCTAGCTGCTGATACGATGGAACT
LOC_Os05g08370
Os.10183.1.S2_at--1090--7351Chr05:4543539..4543563 (25 bp)
GTGAAGCCTTATTTTGCCTGCGAAG
LOC_Os05g08370
Os.10183.1.S2_at--684--1691Chr05:4543513..4543537 (25 bp)
AGCCAGCCCAGCAGCGTAAATTGTG
LOC_Os05g08370
Os.10183.1.S2_at--756--10311Chr05:4543482..4543506 (25 bp)
TTTCTTCTTTTGTGACACCCGTTAT
LOC_Os05g08370
Os.10183.1.S2_at--9--6891Chr05:4543327..4543351 (25 bp)
GTATTTCAGCTGTTCACTTGACAAG
LOC_Os05g08370
Os.10183.1.S2_at--273--6751Chr05:4543273..4543297 (25 bp)
GTTCATGACATTTGCATTCTCTGTT
LOC_Os05g08370
Target Sequence 
AAGATCGATCCTTTCATTTCGCCTACTCAGAAAGCCGTCGCCTTGGGGCAATGCGGTGTGAACTGCTGATCGGCACCGTT
ACGAAGATGAACTTCAATCAATCAAGGTCTACCCCCCCTTGTGTAAATACCTGAGGGGGGCTAGAATGGGATCTTCTTTT
TGTGTAGATGAAGACCTTTTTTATCTAAGTTATGCCACTGTTTATTAGCTACTTCAGTGCTGGCGCTAGCTGCTGATACG
ATGGAACTGTGAAGCCTTATTTTGCCTGCGAAGAAGCCAGCCCAGCAGCGTAAATTGTGAATTTTTTTCTTCTTTTGTGA
CACCCGTTATTTTAGTCATTTGTTTGAGGGGTCGTTGTTACACATACTATGGGATGTTATTTATACGGATATATTCCAAT
TACATTCTTTTGCGGTGAACATTTTAATTATATTCGTAGCATATAATGNAAGGGCAACTCAGTATTTCAGCTGTTCACTT
GACAAGTTGCAACACATATACATCTTGAGTTGTTTGTTCATGACATTTGCATTCTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10183.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis