Browse Element(s) Details


OsAffx.26785.1.S1_at

Description tigr:9633.m00748
TID=OsAffx.26785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0832011/11hypothetical protein
LOC_Os12g216601/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08280OsAffx.22850.1.S1_x_at2/115+4494710..4497071retrotransposon protein, putative, unclassified
LOC_Os05g08280OsAffx.30486.1.S1_at1/115+4494710..4497071retrotransposon protein, putative, unclassified
LOC_Os05g08280OsAffx.11259.1.S1_at1/115+4494710..4497071retrotransposon protein, putative, unclassified
LOC_Os05g08290NANA5+4499414..4506161retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08300Os.46314.2.S1_x_at1/115+4508176..4511280retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08300Os.10731.2.A1_at1/115+4508176..4511280retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08310OsAffx.16111.1.S1_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08310OsAffx.3363.1.S1_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08310OsAffx.22699.1.S1_x_at1/115+4513701..4520083retrotransposon protein, putative, unclassified
LOC_Os05g08320OsAffx.26785.1.S1_at11/115+4521986..4523234hypothetical protein
LOC_Os05g08330NANA5+4524280..4524820hypothetical protein
LOC_Os05g08340OsAffx.14591.1.S1_at11/115+4526278..4527725hypothetical protein
LOC_Os05g08350Os.8122.1.S1_at11/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08350OsAffx.4275.1.S1_at10/115+4529258..4535067F-box domain containing protein, expressed
LOC_Os05g08360Os.53192.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360OsAffx.4276.1.S1_s_at11/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08360Os.47666.1.S1_at1/115+4537272..4540443Fibrillarin-2, putative, expressed
LOC_Os05g08370Os.10183.1.S1_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed
LOC_Os05g08370Os.10183.1.S2_at11/115+4543263..4549377Cellulose synthase A catalytic subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26785.1.S1_at--277--4131Chr05:4522641..4522665 (25 bp)
CGCATTTGCCGAAGCAGCGGTCAAC
LOC_Os05g08320
OsAffx.26785.1.S1_at--683--4671Chr05:4522625..4522649 (25 bp)
GCGGTCAACCCGGAACAACATGAGG
LOC_Os05g08320
OsAffx.26785.1.S1_at--974--7231Chr05:4522461..4522573 (25 bp)
GTCCCTCCGGGACAGAAGAGATCGT
LOC_Os05g08320
OsAffx.26785.1.S1_at--170--5631Chr05:4522436..4522460 (25 bp)
GACAACAATGATCGCCATCGACATC
LOC_Os05g08320
OsAffx.26785.1.S1_at--187--5111Chr05:4522360..4522384 (25 bp)
GCACTCCTCCACGACAGAGAAGGGA
LOC_Os05g08320
OsAffx.26785.1.S1_at--501--651Chr05:4522312..4522336 (25 bp)
ATGAAGATCGGGACCGACGGGCCCA
LOC_Os05g08320
OsAffx.26785.1.S1_at--186--331Chr05:4522264..4522288 (25 bp)
ATAACGACTTCCAGCGAGACCAAGC
LOC_Os05g08320
OsAffx.26785.1.S1_at--91--6011Chr05:4522249..4522273 (25 bp)
GAGACCAAGCAGCTAATCGTCGAGA
LOC_Os05g08320
OsAffx.26785.1.S1_at--938--6031Chr05:4522198..4522222 (25 bp)
GAGATCGGAATTCCCAGTCTCATTC
LOC_Os05g08320
OsAffx.26785.1.S1_at--722--511Chr05:4522147..4522171 (25 bp)
ATCGTTCGAGAAGCTAGGCTCCTCA
LOC_Os05g08320
OsAffx.26785.1.S1_at--52--132Chr12:12171533..12171556 (24 bp)
ATTCACGCCCGAACTCTGAGATGTA
LOC_Os12g21660
Target Sequence 
CGCATTTGCCGAAGCAGCGGTCAACCCGGAACAACATGAGGATGAAGGGCCAACTGCAGGAGATGCGGACGGAGAAAATC
CCAACGGAACGCGTCCCTCCGGGACAGAAGAGATCGTGACAACAATGATCGCCATCGACATCGCTCTCCTTCACACCGCG
GGGATAACGCTGCTGCCCGACGACATCGTCACCGCACTCCTCCACGACAGAGAAGGGACGATGGTCGGGGAGGTGCACCT
AATGAAGATCGGGACCGACGGGCCCACAGCGGTCGCCGCGGCGACGCCAATAACGACTTCCAGCGAGACCAAGCAGCTAA
TCGTCGAGATCAGGAGCGGAACGGCGGCAACCGACGAGATCGGAATTCCCAGTCTCATTCTCCCGGTCGAGGTCGAGGAC
GAGATCATCGTTCGAGAAGCTAGGCTCCTCAACCAAGCGACCCCTTGTCCTCGTCATCATCCTCGTCAGACCAGCTTCCC
CGATGACATCAGCATCGCGGGCTACCTTTTGCTCCAGGGGGTGGATGCAGGGCATTCACGCCCGAACTCTGAGATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis