Browse Element(s) Details


Os.23317.1.S1_at

Description gb:AK071851.1
DB_XREF= gi:32981874
TID=Os.23317.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023116O21, full insert sequence.
FL= gb:AK071851.1 gb:AK072118.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5422011/11expressed protein
LOC_Os09g146144/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54180NANA3+31010290..31010564hypothetical protein
LOC_Os03g54190OsAffx.13487.1.S1_at11/113+31014511..31016225expressed protein
LOC_Os03g54200Os.7237.1.S1_a_at11/113+31028016..31030309expressed protein
LOC_Os03g54210OsAffx.25712.1.S1_at11/113+31031792..31032259hypothetical protein
LOC_Os03g54220Os.23317.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.52485.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.23317.1.S2_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.49341.1.S1_x_at5/113+31033044..31037646expressed protein
LOC_Os03g54220Os.51537.1.S1_at1/113+31033044..31037646expressed protein
LOC_Os03g54230OsAffx.13488.1.S1_at11/113+31041615..31042091Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative
LOC_Os03g54240Os.49363.3.S1_at11/113+31044663..31047885expressed protein
LOC_Os03g54240Os.49363.1.S1_x_at10/113+31044663..31047885expressed protein
LOC_Os03g54244NANA3+31059931..31063555retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000904biological_processcellular morphogenesis during differentiation
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23317.1.S1_at--775--8352Chr11:25772037..25772058 (22 bp)
GGCGGCATCACTAATTTAACTCCAA
NONE
Os.23317.1.S1_at--884--1294Chr09:8665146..8665170 (25 bp)
AGATGCGAGAGTACTACCAGCGAAA
LOC_Os09g14614
Os.23317.1.S1_at--381--1194Chr09:8665117..8665141 (25 bp)
AGTATTGATCCTGTACCTACCCATG
LOC_Os09g14614
Os.23317.1.S1_at--452--3132Chr03:31035629..31035653 (25 bp)
AATTATTATCTCACAAACGGCGTAG
LOC_Os03g54220
Os.23317.1.S1_at--816--514Chr09:8664887..8664911 (25 bp)
ATCGTTGATCTATGTTGTGTCTGTC
LOC_Os09g14614
Os.23317.1.S1_at--215--10231Chr03:31035402..31035426 (25 bp)
TATTGATCTGTGATGCTGCATTTAC
LOC_Os03g54220
Os.23317.1.S1_at--538--9876Chr11:25771618..25771642 (25 bp)
TACATGTGGTGCACACTCATCACTA
NONE
Os.23317.1.S1_at--12--9833Chr11:25771595..25771619 (25 bp)
TACAACGACTTCTCCTATGGTATTA
NONE
Os.23317.1.S1_at--201--331Chr03:31035330..31035354 (25 bp)
ATACTGTCTCTCTGTTTGGTCATGA
LOC_Os03g54220
Os.23317.1.S1_at--562--6376Chr11:25771545..25771569 (25 bp)
GATCCTGGTAGTTGTTTTACTGGCT
NONE
Os.23317.1.S1_at--516--6816Chr11:25771532..25771556 (25 bp)
GTTTTACTGGCTAGGTGCTCACATT
NONE
Target Sequence 
GGCGGCATCACTAATTTAACTCCAATCGCTNATATACAANGCTGCCGAGAATTGAGTTTAATTTATGCGGAAGAGTGCTA
GGGAGCGGTATGCTGCTCTTAGTGCTGACGACAAGGAAGCTAGGCTTCAAAAGATGCGAGAGTACTACCAGCGAAAAAAN
AGTATTGATCCTGTACCTACCCATGGTATTTAAATTATTATCTCACAAACGGCGTAGATCTGAAGTGAAATCTTGCCACT
GGACACAAGCTCACTCTTCTTCAGGACGTCAGGTTCCTTCATCACCCGGGTACTCTTTCCTACTGTGAAAATAAGACCAG
TTTCTTCTGTTTGTCCTGTTTTTACTTGATTAATTTCTGCGATATCAATTTTTTTAACATGCGATAGAAATATCGTTGAT
CTATGTTGTGTCTGTCAATTTATTGATCTGTGATGCTGCATTTACATGTGGTGCACACTCATCACTACAACGACTTCTCC
TATGGTATTAACATACTGTCTCTCTGTTTGGTCATGATCCTGGTAGTTGTTTTACTGGCTAGGTGCTCACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis