Browse Element(s) Details


Os.23317.1.S2_at

Description gb:AK072118.1
DB_XREF= gi:32982141
TID=Os.23317.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121D19, full insert sequence.
FL= gb:AK071851.1 gb:AK072118.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5422011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54180NANA3+31010290..31010564hypothetical protein
LOC_Os03g54190OsAffx.13487.1.S1_at11/113+31014511..31016225expressed protein
LOC_Os03g54200Os.7237.1.S1_a_at11/113+31028016..31030309expressed protein
LOC_Os03g54210OsAffx.25712.1.S1_at11/113+31031792..31032259hypothetical protein
LOC_Os03g54220Os.23317.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.52485.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.23317.1.S2_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.49341.1.S1_x_at5/113+31033044..31037646expressed protein
LOC_Os03g54220Os.51537.1.S1_at1/113+31033044..31037646expressed protein
LOC_Os03g54230OsAffx.13488.1.S1_at11/113+31041615..31042091Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative
LOC_Os03g54240Os.49363.3.S1_at11/113+31044663..31047885expressed protein
LOC_Os03g54240Os.49363.1.S1_x_at10/113+31044663..31047885expressed protein
LOC_Os03g54244NANA3+31059931..31063555retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23317.1.S2_at--146--2436Chr08:17336291..17336315 (25 bp)
AAAACTTTGCATGCACCTTGGGCAT
NONE
Os.23317.1.S2_at--62--1391Chr03:31033487..31033511 (25 bp)
AGACGAGTATGTGTCGGGCTACCAT
LOC_Os03g54220
Os.23317.1.S2_at--571--9434Chr06:9990484..9990508 (25 bp)
TCGGGCTACCATTGACCAGAAAGAT
NONE
Os.23317.1.S2_at--618--3071Chr03:31033436..31033460 (25 bp)
AATCATTCTTTGTTGTCTCTCTTAG
LOC_Os03g54220
Os.23317.1.S2_at--120--6596Chr08:17336474..17336498 (25 bp)
GATTGTTGAACTCGAATTTCCTTGA
NONE
Os.23317.1.S2_at--1064--6334Chr08:17336520..17336543 (24 bp)
GATGCTCATTCTAGCTCTGTATGCA
NONE
Os.23317.1.S2_at--368--5133Chr08:14451693..14451717 (25 bp)
GCAAATTCATGCTTCGTCAGTTAAT
NONE
Os.23317.1.S2_at--578--9771Chr03:31033240..31033264 (25 bp)
TAAGTACCCATGTTCTGTAGCCTCT
LOC_Os03g54220
Os.23317.1.S2_at--1083--3012Chr08:14444945..14444964 (20 bp)
AATCCTTTTGATCTGCATACGTACT
NONE
Os.23317.1.S2_at--298--3175Chr08:17336756..17336780 (25 bp)
AATTGACGTGGGTGCACATGTCCAT
NONE
Os.23317.1.S2_at--661--7331Chr03:31033099..31033123 (25 bp)
GTGCACATGTCCATATTTCTCTTTG
LOC_Os03g54220
Target Sequence 
AAAACTTTGCATGCACCTTGGGCATGAGAACAACTAAATGGATTTGTTTTCATTATTTTATCTATGTTTGGGCATTTTAT
CGTGTTTGAGACGAGTATGTGTCGGGCTACCATTGACCAGAAAGATAGACTGATATAGAAATCATTCTTTGTTGTCTCTC
TTAGTTTGTAATTAGAATTATCTGATTGTTGAACTCGAATTTCCTTGATGAAAATTATATTTGTTCAGAGATGCTCATTC
TAGCTCTGTATGCAGATTTGGTGATTGAAGAAATGCATCGTAACATTTTGGCATGGTTTGAAAATATCGCAAATTCATGC
TTCGTCAGTTAATTCTAAGTACCCATGTTCTGTAGCCTCTCCTTTTCTCATTTTTCACACAATCCTTTTGATCTGCATAC
GTACTATTTTTCTTTGTGTGCTACGGAATGTGATTAAACCATGTTGTTCATATAAAGAAGCATAGAATTGACGTGGGTGC
ACATGTCCATATTTCTCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23317.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis