Browse Element(s) Details


Os.2350.1.S1_at

Description gb:AK059669.1
DB_XREF= gi:32969687
TID=Os.2350.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription factor X1 (P0663E10.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F06, full insert sequence.
FL= gb:AK059669.1 gb:AK069077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4423010/11X1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44200Os.31613.2.S1_at9/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.31613.2.S1_x_at6/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.41174.1.S1_at4/111+25663424..25673267hypothetical protein
LOC_Os01g44210Os.11136.1.S1_at11/111+25677526..25678384ribosomal protein L31 containing protein, expressed
LOC_Os01g44220Os.6732.1.S1_a_at11/111+25680653..25688790Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os01g44230Os.2350.1.S1_at10/111+25689947..25694005X1, putative, expressed
LOC_Os01g44240NANA1+25694293..25694748Zinc finger, C3HC4 type family protein
LOC_Os01g44250Os.30324.2.S1_x_at11/111+25695329..25697854YZ1, putative, expressed
LOC_Os01g44260Os.3379.1.S1_at11/111+25709546..25711525Dihydroflavonol-4-reductase, putative, expressed
LOC_Os01g44270NANA1+25712104..25713629hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2350.1.S1_at--201--5551Chr01:25693468..25693492 (25 bp)
GAAACGGTCCAGTTCGTCCTGAGAC
LOC_Os01g44230
Os.2350.1.S1_at--407--991Chr01:25693507..25693531 (25 bp)
AGGAGGAAGCGCTAAGCCCACCTGT
LOC_Os01g44230
Os.2350.1.S1_at--82--8811Chr01:25693529..25693553 (25 bp)
TGTTCGATGCCATTGCGTGTAGCGC
LOC_Os01g44230
Os.2350.1.S1_at--265--6771Chr01:25693636..25693660 (25 bp)
GTTAGACCATGGCTGTTTCATTCCT
LOC_Os01g44230
Os.2350.1.S1_at--880--10091Chr01:25693714..25693738 (25 bp)
TATGGTCCACCTGTACAAGTAGATC
LOC_Os01g44230
Os.2350.1.S1_at--117--6951Chr01:25693732..25693756 (25 bp)
GTAGATCTGTTTTCACCTGTTTTAG
LOC_Os01g44230
Os.2350.1.S1_at--837--6151Chr01:25693781..25693805 (25 bp)
GAGGTACTTTATTCATCTGCTTGGT
LOC_Os01g44230
Os.2350.1.S1_at--1149--1171Chr01:25693846..25693870 (25 bp)
AGTACTGCTTGTCCGATTGAAGCCT
LOC_Os01g44230
Os.2350.1.S1_at--485--2271Chr01:25693915..25693939 (25 bp)
AAATCTGTCAGTGCCTGGTTGGTGC
LOC_Os01g44230
Os.2350.1.S1_at--345--8431Chr01:25693942..25693966 (25 bp)
GGCCTTCAGGGCAGACTGTTATTCA
LOC_Os01g44230
Os.2350.1.S1_at--432--1891NONE
ACTGTTATTCAGCTCGGGTATTTCG
NONE
Target Sequence 
GAAACGGTCCAGTTCGTCCTGAGACAGTGGCGAGCGAACAGGAGGAAGCGCTAAGCCCACCTGTTCGATGCCATTGCGTG
TAGCGCTGCTGTTTGCGTTCCACCTGATCTGGACATCATGCTACTTAAGCATTAGCTCATTCGAGATCTGTAGTAACTAT
GTAGTGGGGTTAGACCATGGCTGTTTCATTCCTTGTTGGACACAAAATAAGTTGGTACTATTGCAGTATCTGCATTGGTG
GCCACCTATGGTCCACCTGTACAAGTAGATCTGTTTTCACCTGTTTTAGGTATGCTATGTACAGCCATGAACCGAGGTAC
TTTATTCATCTGCTTGGTATGCAGATGCAGCGGAATATGTAGTAGTATGACTGTATGAAGTACTGCTTGTCCGATTGAAG
CCTGTATGAGCAAAGTAGAGAGACTGTATGAAGTGCTTCTCTGATTGAAATCTGTCAGTGCCTGGTTGGTGCTTGGCCTT
CAGGGCAGACTGTTATTCAGCTCGGGTATTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis