Browse Element(s) Details


Os.2352.1.S1_a_at

Description gb:AY551918.1
DB_XREF= gi:45385957
TID=Os.2352.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2352 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) MADS-box protein RMADS213 mRNA, complete cds.
PROD=MADS-box protein RMADS213
FL= gb:AY551918.1 gb:AK070540.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4915011/11Agamous-like MADS box protein AGL6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49120OsAffx.26632.1.S1_x_at4/114+29064191..29067075retrotransposon protein, putative, LINE subclass
LOC_Os04g49120OsAffx.26632.1.S1_at3/114+29064191..29067075retrotransposon protein, putative, LINE subclass
LOC_Os04g49120Os.26869.1.A1_at2/114+29064191..29067075retrotransposon protein, putative, LINE subclass
LOC_Os04g49130Os.7341.1.S1_at11/114+29070092..29073108Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os04g49140Os.57212.1.S1_at11/114+29077378..29078553expressed protein
LOC_Os04g49150Os.2352.1.S1_a_at11/114+29089153..29095022Agamous-like MADS box protein AGL6, putative, expressed
LOC_Os04g49160Os.27330.1.A1_at11/114+29098117..29099361Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g49170OsAffx.4126.1.S1_at11/114+29104906..29105424Zinc finger, C3HC4 type family protein
LOC_Os04g49180OsAffx.14337.2.A1_at4/114+29106794..29107138hypothetical protein
LOC_Os04g49194Os.17316.1.S1_at11/114+29112473..29119170oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0048481biological_processovule development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2352.1.S1_a_at--25--851Chr04:29092870..29092894 (25 bp)
ATGGAGCAGGTCGACGATCTTCGCC
LOC_Os04g49150
Os.2352.1.S1_a_at--1114--8171Chr04:29094259..29094283 (25 bp)
GGAACGCCAGCTTGGAGAGCTCAAT
LOC_Os04g49150
Os.2352.1.S1_a_at--781--2551Chr04:29094485..29094509 (25 bp)
AACTGCAGATCAGCCATCCAGGATT
LOC_Os04g49150
Os.2352.1.S1_a_at--1109--991Chr04:29094504..29094528 (25 bp)
AGGATTCCTGGGTCCATGGCACCGT
LOC_Os04g49150
Os.2352.1.S1_a_at--1094--1331Chr04:29094542..29094566 (25 bp)
AGAGTGCTGAATGCTCAACCACCAC
LOC_Os04g49150
Os.2352.1.S1_a_at--667--10751Chr04:29094573..29094597 (25 bp)
TTGACTGTGAGCCTACTCTGCAAAT
LOC_Os04g49150
Os.2352.1.S1_a_at--914--7831Chr04:29094687..29094711 (25 bp)
GGTACTATCAATTTGTCCGTCCTGA
LOC_Os04g49150
Os.2352.1.S1_a_at--150--2471Chr04:29094755..29094779 (25 bp)
AACAACTTTGTGATGGGATGGCCCC
LOC_Os04g49150
Os.2352.1.S1_a_at--513--4191Chr04:29094777..29094801 (25 bp)
CCCTCTGAAGTCCAAGCTTGCTAAT
LOC_Os04g49150
Os.2352.1.S1_a_at--586--1191Chr04:29094860..29094884 (25 bp)
AGTATGTATATTTCTCCCCTATCCG
LOC_Os04g49150
Os.2352.1.S1_a_at--868--10111Chr04:29094879..29094903 (25 bp)
TATCCGGTGGTACTCTTAGCACGTA
LOC_Os04g49150
Target Sequence 
ATGGAGCAGGTCGACGATCTTCGCCGGAAGGAACGCCAGCTTGGAGAGCTCAATAAGCAACTGAAAAACAAGCTAGAAGC
TGAAGCCGATAGCAGCAACTGCAGATCAGCCATCCAGGATTCCTGGGTCCATGGCACCGTCGTCAGTGGCGGCAGAGTGC
TGAATGCTCAACCACCACCAGATATTGACTGTGAGCCTACTCTGCAAATTGGGTACTATCAATTTGTCCGTCCTGAGGCG
GCCAATCCAAGAAGCAATGGAGGAGGAGGGGATCAGAACAACAACTTTGTGATGGGATGGCCCCTCTGAAGTCCAAGCTT
GCTAATAAAAACGCTGGCGTGCTATAATATATAGTTCGGCAAATGTTGAAACACATGTGTTCTCAGTATGTATATTTCTC
CCCTATCCGGTGGTACTCTTAGCACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2352.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis