Browse Element(s) Details


Os.23607.1.S1_at

Description gb:AK105734.1
DB_XREF= gi:32990943
TID=Os.23607.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-H10, full insert sequence.
FL= gb:AK105734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0163011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01590Os.54343.1.S1_at10/115+329682..332081DnaJ domain containing protein, expressed
LOC_Os05g01600Os.11740.1.S1_at11/115+332178..334669Actin-97, putative, expressed
LOC_Os05g01610OsAffx.26679.1.S1_at11/115+340542..344003Chromosome condensation factor, putative
LOC_Os05g01620OsAffx.14492.1.S1_at11/115+346519..348964F-box domain containing protein
LOC_Os05g01630Os.23607.1.S1_at11/115+350802..353725F-box domain containing protein, expressed
LOC_Os05g01630OsAffx.14492.1.S1_at1/115+350802..353725F-box domain containing protein, expressed
LOC_Os05g01640NANA5+359216..359803retrotransposon protein, putative, unclassified
LOC_Os05g01650NANA5+362911..369565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g01660NANA5+371919..374565retrotransposon protein, putative, unclassified
LOC_Os05g01670NANA5+375190..381345retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23607.1.S1_at--293--2411Chr05:351331..351355 (25 bp)
AACTAGATTCCCTAACAATGAGCAA
LOC_Os05g01630
Os.23607.1.S1_at--805--6411Chr05:351300..351324 (25 bp)
GATCTACTAAGAGAGCAACTCCTGC
LOC_Os05g01630
Os.23607.1.S1_at--385--3471Chr05:351276..351300 (25 bp)
CAGGGATTCTCATCGTCTATAGAAA
LOC_Os05g01630
Os.23607.1.S1_at--252--10571Chr05:351218..351242 (25 bp)
TTCTTTTCATGCCAGTAATTGTTCT
LOC_Os05g01630
Os.23607.1.S1_at--78--5271Chr05:351147..351171 (25 bp)
GAATGCAAAGTTTCCTGTAATTTCA
LOC_Os05g01630
Os.23607.1.S1_at--859--1131Chr05:351043..351067 (25 bp)
AGTGCCACACAGGAGTCATCTGAAG
LOC_Os05g01630
Os.23607.1.S1_at--953--5631Chr05:350982..351006 (25 bp)
GACATGGAAGGTTTCTCTTTACGTA
LOC_Os05g01630
Os.23607.1.S1_at--898--191Chr05:350922..350946 (25 bp)
ATTTCTCTCTTAACTTACAGCGCAC
LOC_Os05g01630
Os.23607.1.S1_at--350--4591Chr05:350903..350927 (25 bp)
GCGCACAAGAACTTTATTTGGGTCA
LOC_Os05g01630
Os.23607.1.S1_at--91--2271Chr05:350859..350883 (25 bp)
AAATCCGGACATGTACTATGGCGTT
LOC_Os05g01630
Os.23607.1.S1_at--668--8751Chr05:350848..350872 (25 bp)
TGTACTATGGCGTTGTTCTGATATT
LOC_Os05g01630
Target Sequence 
AACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGCAGGGATTCTCATCGTCTATAGAAA
TAATAATAGGTTGTTACTAGTAATTGTTAGATTTTCTTTTCATGCCAGTAATTGTTCTAAACATGAAAATTTTGAATTTT
GATATTCTTATATCATGGGGTTCAGAATGCAAAGTTTCCTGTAATTTCAAAATTCTTTACATTATTGATTCTAAAATCCC
AAAATTTGAAATGCCAAGCAGGGGAAGACTGATTTTTTTCGGGCACTCAGTGCCACACAGGAGTCATCTGAAGGTGATGG
CGTAGAAGATTTGAAGTTAGCTTGGTGGTGACATGGAAGGTTTCTCTTTACGTAGAATTGACTACTACCTTTACCAACGG
TATATAAGAATTTCTCTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAATCCGG
ACATGTACTATGGCGTTGTTCTGATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis