Browse Element(s) Details


Os.2365.1.S1_at

Description gb:AY206864.1
DB_XREF= gi:28848939
GEN=Hox2
TID=Os.2365.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2365 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) homeodomain leucine zipper protein (Hox2) mRNA, complete cds.
PROD=homeodomain leucine zipper protein
FL= gb:AK105150.1 gb:AY206864.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0487011/11SlHDL2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04840Os.53844.1.S1_at11/116+2111540..2115562Leucine Rich Repeat family protein, expressed
LOC_Os06g04850Os.37618.1.S1_at11/116+2122411..2123782Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os06g04850Os.49759.1.S1_x_at1/116+2122411..2123782Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os06g04860OsAffx.4724.1.S1_at11/116+2135048..2135555hypothetical protein
LOC_Os06g04860Os.28079.1.S1_x_at1/116+2135048..2135555hypothetical protein
LOC_Os06g04860Os.28079.2.S1_x_at1/116+2135048..2135555hypothetical protein
LOC_Os06g04870Os.2365.1.S1_at11/116+2136451..2138092SlHDL2, putative, expressed
LOC_Os06g04870Os.49759.1.S1_x_at1/116+2136451..2138092SlHDL2, putative, expressed
LOC_Os06g04880Os.26392.1.S1_at11/116+2139054..2145617U-box domain containing protein, expressed
LOC_Os06g04890NANA6+2151140..2151538expressed protein
LOC_Os06g04900OsAffx.15266.1.S1_x_at11/116+2154078..2155717Hexose carrier protein HEX6, putative
LOC_Os06g04910Os.16783.1.S1_at10/116+2156496..2159577hydrolase, NUDIX family protein, expressed
LOC_Os06g04920Os.10583.1.S1_at11/116+2161624..2168677Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04920Os.10583.1.S1_s_at11/116+2161624..2168677Zn-finger in Ran binding protein and others containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2365.1.S1_at--1152--2191Chr06:2137624..2137648 (25 bp)
ACAAGCCAGAGCACGTGGAACGCCG
LOC_Os06g04870
Os.2365.1.S1_at--588--10551Chr06:2137675..2137699 (25 bp)
TTCTAGAAACAATCCATCCATCGCC
LOC_Os06g04870
Os.2365.1.S1_at--876--6451Chr06:2137718..2137742 (25 bp)
GATCAAGCTTTGATTGGTCAAGACA
LOC_Os06g04870
Os.2365.1.S1_at--580--3231Chr06:2137736..2137760 (25 bp)
CAAGACAGTGTTTTTACCAGGTGGT
LOC_Os06g04870
Os.2365.1.S1_at--1030--6551Chr06:2137806..2137830 (25 bp)
GATTAATTGCCTTGATTTGGTACCT
LOC_Os06g04870
Os.2365.1.S1_at--767--2411Chr06:2137929..2137953 (25 bp)
AAAAATGGCCGTCTGCTTTTTCTTG
LOC_Os06g04870
Os.2365.1.S1_at--567--4891Chr06:2137943..2137967 (25 bp)
GCTTTTTCTTGGACGGCATTCTTAT
LOC_Os06g04870
Os.2365.1.S1_at--492--5711Chr06:2137954..2137978 (25 bp)
GACGGCATTCTTATATGTACCAATT
LOC_Os06g04870
Os.2365.1.S1_at--1024--731Chr06:2137968..2137992 (25 bp)
ATGTACCAATTCACCAAATCTGCTG
LOC_Os06g04870
Os.2365.1.S1_at--298--2271Chr06:2137983..2138007 (25 bp)
AAATCTGCTGGTTGGTGGATTAACA
LOC_Os06g04870
Os.2365.1.S1_at--97--6611Chr06:2138027..2138051 (25 bp)
GATTGTACTACTACCACTAATTGAT
LOC_Os06g04870
Target Sequence 
ACAAGCCAGAGCACGTGGAACGCCGCCGCGCCGCTCGTCACCAGAGAGCTCTTCTAGAAACAATCCATCCATCGCCATGA
CAAACTTGGGAAAGGATCAAGCTTTGATTGGTCAAGACAGTGTTTTTACCAGGTGGTGATTTGGTTAATTAATTAATTAT
AATTAATCACTCAAGAGGAGGGGATTAATTGCCTTGATTTGGTACCTAATTACTAGTATGATTAGCAGTAGTAGTAGTAG
CAGCAAATTTGGTTTGGATTAATTCAGTTTGATTCCATGATATGAACAAAGGAACAAAGCAACAAAAAAATGGCCGTCTG
CTTTTTCTTGGACGGCATTCTTATATGTACCAATTCACCAAATCTGCTGGTTGGTGGATTAACAGCTTGATAATTGGTAT
ATTGATTGTACTACTACCACTAATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis