Browse Element(s) Details

Os.26392.1.S1_at

Description

gb:AK065683.1
DB_XREF= gi:32975701
TID=Os.26392.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.26392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31017 putative serinethreonine protein kinase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037K06, full insert sequence.
FL= gb:AK105657.1 gb:AK065683.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04880	11/11	U-box domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04840	Os.53844.1.S1_at	11/11	6	+	2111540..2115562	Leucine Rich Repeat family protein, expressed
LOC_Os06g04850	Os.37618.1.S1_at	11/11	6	+	2122411..2123782	Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os06g04850	Os.49759.1.S1_x_at	1/11	6	+	2122411..2123782	Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os06g04860	OsAffx.4724.1.S1_at	11/11	6	+	2135048..2135555	hypothetical protein
LOC_Os06g04860	Os.28079.1.S1_x_at	1/11	6	+	2135048..2135555	hypothetical protein
LOC_Os06g04860	Os.28079.2.S1_x_at	1/11	6	+	2135048..2135555	hypothetical protein
LOC_Os06g04870	Os.2365.1.S1_at	11/11	6	+	2136451..2138092	SlHDL2, putative, expressed
LOC_Os06g04870	Os.49759.1.S1_x_at	1/11	6	+	2136451..2138092	SlHDL2, putative, expressed
LOC_Os06g04880	Os.26392.1.S1_at	11/11	6	+	2139054..2145617	U-box domain containing protein, expressed
LOC_Os06g04890	NA	NA	6	+	2151140..2151538	expressed protein
LOC_Os06g04900	OsAffx.15266.1.S1_x_at	11/11	6	+	2154078..2155717	Hexose carrier protein HEX6, putative
LOC_Os06g04910	Os.16783.1.S1_at	10/11	6	+	2156496..2159577	hydrolase, NUDIX family protein, expressed
LOC_Os06g04920	Os.10583.1.S1_at	11/11	6	+	2161624..2168677	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04920	Os.10583.1.S1_s_at	11/11	6	+	2161624..2168677	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04930	Os.3571.2.S1_s_at	11/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	OsAffx.15267.1.S1_at	11/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	Os.3571.1.S1_at	2/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	Os.55511.1.S1_at	1/11	6	+	2169964..2172401	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.26392.1.S1_at--135--957	1	Chr06:2139724..2139744 (21 bp)	TCATTTGCCCCATACTTCAGGAAGT	LOC_Os06g04880
Os.26392.1.S1_at--664--85	1	Chr06:2139579..2139603 (25 bp)	ATGGCTGATCCATATGTCGCATCGG	LOC_Os06g04880
Os.26392.1.S1_at--95--897	1	Chr06:2139505..2139529 (25 bp)	TGACAAGTCCCCTATGACAAATCTG	LOC_Os06g04880
Os.26392.1.S1_at--697--605	1	Chr06:2139481..2139505 (25 bp)	GAGATTGCCTCACAAGAGCCTTATA	LOC_Os06g04880
Os.26392.1.S1_at--388--1033	1	Chr06:2139461..2139485 (25 bp)	TTATACCAAATCACTCGCTTCGTTC	LOC_Os06g04880
Os.26392.1.S1_at--727--491	1	Chr06:2139445..2139469 (25 bp)	GCTTCGTTCTGCAATCATCGACTGG	LOC_Os06g04880
Os.26392.1.S1_at--236--119	1	Chr06:2139407..2139431 (25 bp)	AGTAGCTGGTACACATTCTGGCCTG	LOC_Os06g04880
Os.26392.1.S1_at--901--615	1	Chr06:2139249..2139273 (25 bp)	GAGGTTCAAGTTGTGCAGCTTTATC	LOC_Os06g04880
Os.26392.1.S1_at--772--559	1	Chr06:2139210..2139234 (25 bp)	GAAATTGTTTCCTACTAGCTCATAG	LOC_Os06g04880
Os.26392.1.S1_at--216--1037	1	Chr06:2139138..2139162 (25 bp)	TTTTTCTCCTTTGCCATTCATAATG	LOC_Os06g04880
Os.26392.1.S1_at--576--493	1	Chr06:2139102..2139126 (25 bp)	GCTTGTAATTAGTGCTCTCAACATT	LOC_Os06g04880

Target Sequence

TCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATC
GAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTC
GCTTCGTTCTGCAATCATCGACTGGAGAACAAAGAGTTAGTAGCTGGTACACATTCTGGCCTGCATTCTCCAGAATGTAG
CAGTTGATGATTGATTTTCTTCTCAAGGTGTAAATTTTTTGCAGATCTCATGTAGAAGTAGTCTTCATGTTGGTTCCNAA
AAATNAAAAATAAAATAAAATAAGTGGTGTTCATAAAGAGGTTCAAGTTGTGCAGCTTTATCAAATAGTAGTAGTAGAAA
TTGTTTCCTACTAGCTCATAGGCAAACACCTTCCACCTCACTGTNTTAGTGAATGGTGAACAATTATTTTTTTCTCCTTT
GCCATTCATAATGATGTGTTGTAAGCTTGTAATTAGTGCTCTCAACATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis