Browse Element(s) Details


Os.37618.1.S1_at

Description gb:AK102692.1
DB_XREF= gi:32987901
TID=Os.37618.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033103D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103D12, full insert sequence.
FL= gb:AK102692.1 gb:AK059116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0485011/11Homeobox-leucine zipper protein HAT3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04810OsAffx.27458.1.S1_at11/116+2094929..2097814Leucine Rich Repeat family protein
LOC_Os06g04820Os.25025.1.S1_at11/116+2099282..2104395Leucine carboxyl methyltransferase family protein, expressed
LOC_Os06g04820Os.22618.1.S1_at2/116+2099282..2104395Leucine carboxyl methyltransferase family protein, expressed
LOC_Os06g04830OsAffx.15265.1.S1_at11/116+2106122..2109064Leucine Rich Repeat family protein, expressed
LOC_Os06g04840Os.53844.1.S1_at11/116+2111540..2115562Leucine Rich Repeat family protein, expressed
LOC_Os06g04850Os.37618.1.S1_at11/116+2122411..2123782Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os06g04850Os.49759.1.S1_x_at1/116+2122411..2123782Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os06g04860OsAffx.4724.1.S1_at11/116+2135048..2135555hypothetical protein
LOC_Os06g04860Os.28079.1.S1_x_at1/116+2135048..2135555hypothetical protein
LOC_Os06g04860Os.28079.2.S1_x_at1/116+2135048..2135555hypothetical protein
LOC_Os06g04870Os.2365.1.S1_at11/116+2136451..2138092SlHDL2, putative, expressed
LOC_Os06g04870Os.49759.1.S1_x_at1/116+2136451..2138092SlHDL2, putative, expressed
LOC_Os06g04880Os.26392.1.S1_at11/116+2139054..2145617U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37618.1.S1_at--336--1751Chr06:2123252..2123276 (25 bp)
ACCTCAAGCGGTGGTGCGACCAGCT
LOC_Os06g04850
Os.37618.1.S1_at--1053--9691Chr06:2123375..2123399 (25 bp)
TCACAATGTGCCTCTCCTGCAAGCG
LOC_Os06g04850
Os.37618.1.S1_at--420--4211Chr06:2123452..2123476 (25 bp)
CCCCAGTTCTTGTGCGGATTCAGAG
LOC_Os06g04850
Os.37618.1.S1_at--49--6571Chr06:2123468..2123492 (25 bp)
GATTCAGAGATCACGCCGGAGCAGC
LOC_Os06g04850
Os.37618.1.S1_at--1156--6991Chr06:2123502..2123526 (25 bp)
GTACGGCGGCGCATCATCTGGACTC
LOC_Os06g04850
Os.37618.1.S1_at--1024--3551Chr06:2123513..2123537 (25 bp)
CATCATCTGGACTCGCGAAGGCGGT
LOC_Os06g04850
Os.37618.1.S1_at--180--5671Chr06:2123582..2123606 (25 bp)
GACATGACCAAGCTAGCGATCTCTA
LOC_Os06g04850
Os.37618.1.S1_at--1025--9991Chr06:2123595..2123619 (25 bp)
TAGCGATCTCTAGCTAGAAGATGAT
LOC_Os06g04850
Os.37618.1.S1_at--151--711Chr06:2123615..2123639 (25 bp)
ATGATGACATTGAGCAAGACGCAAG
LOC_Os06g04850
Os.37618.1.S1_at--19--2491Chr06:2123645..2123669 (25 bp)
AACAGAGTTGAATTGATCTCTCGTT
LOC_Os06g04850
Os.37618.1.S1_at--879--455Chr06:2123660..2123684 (25 bp)
ATCTCTCGTTTTCCTGTGTATTTTT
LOC_Os06g04850
Target Sequence 
ACCTCAAGCGGTGGTGCGACCAGCTCGCCGACGACAACCGCCGCCTCCACAAGGAGCTCGCCGAGCTCAGGGCGCTCAAG
GCCACGCCCACACCGCCCGCCGCCGCGCCGCCATTGACCACCCTCACAATGTGCCTCTCCTGCAAGCGCGTCGCCAATGC
CGGCGTGCCCTCGCCGGCGGCGGCGATATTCCCCGGCCACCCCCAGTTCTTGTGCGGATTCAGAGATCACGCCGGAGCAG
CGTCGTCGTCGTACGGCGGCGCATCATCTGGACTCGCGAAGGCGGTCAGGGCGGCGAGGTAGATCGATCGATGCGCGCGC
CGCCATGATCGACATGACCAAGCTAGCGATCTCTAGCTAGAAGATGATGACATTGAGCAAGACGCAAGAGTAGAACAGAG
TTGAATTGATCTCTCGTTTTCCTGTGTATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis