Browse Element(s) Details


OsAffx.4724.1.S1_at

Description tigr:9634.m00404
TID=OsAffx.4724.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0486011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04840Os.53844.1.S1_at11/116+2111540..2115562Leucine Rich Repeat family protein, expressed
LOC_Os06g04850Os.37618.1.S1_at11/116+2122411..2123782Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os06g04850Os.49759.1.S1_x_at1/116+2122411..2123782Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os06g04860OsAffx.4724.1.S1_at11/116+2135048..2135555hypothetical protein
LOC_Os06g04860Os.28079.1.S1_x_at1/116+2135048..2135555hypothetical protein
LOC_Os06g04860Os.28079.2.S1_x_at1/116+2135048..2135555hypothetical protein
LOC_Os06g04870Os.2365.1.S1_at11/116+2136451..2138092SlHDL2, putative, expressed
LOC_Os06g04870Os.49759.1.S1_x_at1/116+2136451..2138092SlHDL2, putative, expressed
LOC_Os06g04880Os.26392.1.S1_at11/116+2139054..2145617U-box domain containing protein, expressed
LOC_Os06g04890NANA6+2151140..2151538expressed protein
LOC_Os06g04900OsAffx.15266.1.S1_x_at11/116+2154078..2155717Hexose carrier protein HEX6, putative
LOC_Os06g04910Os.16783.1.S1_at10/116+2156496..2159577hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4724.1.S1_at--318--9151Chr06:2135323..2135347 (25 bp)
TGCGTCACTGCTCGATCGTCAGAGG
LOC_Os06g04860
OsAffx.4724.1.S1_at--556--7091Chr06:2135326..2135350 (25 bp)
GTCACTGCTCGATCGTCAGAGGAGA
LOC_Os06g04860
OsAffx.4724.1.S1_at--752--3331Chr06:2135328..2135352 (25 bp)
CACTGCTCGATCGTCAGAGGAGAGA
LOC_Os06g04860
OsAffx.4724.1.S1_at--79--1571Chr06:2135366..2135458 (25 bp)
AGCTACTACAATCGATGAACTGGTC
LOC_Os06g04860
OsAffx.4724.1.S1_at--279--9851Chr06:2135444..2135464 (21 bp)
TACAATCGATGAACTGGTCAGCAGT
LOC_Os06g04860
OsAffx.4724.1.S1_at--276--7831Chr06:2135455..2135479 (25 bp)
GGTCAGCAGTAAGATCCAATATTCT
LOC_Os06g04860
OsAffx.4724.1.S1_at--876--6351Chr06:2135467..2135491 (25 bp)
GATCCAATATTCTTGTAGACGATAC
LOC_Os06g04860
OsAffx.4724.1.S1_at--280--231Chr06:2135473..2135497 (25 bp)
ATATTCTTGTAGACGATACCAATGC
LOC_Os06g04860
OsAffx.4724.1.S1_at--541--6951Chr06:2135481..2135505 (25 bp)
GTAGACGATACCAATGCAAAACATA
LOC_Os06g04860
OsAffx.4724.1.S1_at--483--3011Chr06:2135493..2135517 (25 bp)
AATGCAAAACATAGCCTGCCTCCTC
LOC_Os06g04860
OsAffx.4724.1.S1_at--883--2011Chr06:2135501..2135525 (25 bp)
ACATAGCCTGCCTCCTCAAACAGTT
LOC_Os06g04860
Target Sequence 
TGCGTCACTGCTCGATCGTCAGAGGAGAGAGATGCAGCTGATGAGCTACTACAATCGATGAACTGGTCAGCAGTAAGATC
CAATATTCTTGTAGACGATACCAATGCAAAACATAGCCTGCCTCCTCAAACAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis