Browse Element(s) Details


OsAffx.27458.1.S1_at

Description tigr:9634.m00399
TID=OsAffx.27458.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0481011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04750NANA6+2071406..2071852hypothetical protein
LOC_Os06g04760NANA6+2073051..2073482hypothetical protein
LOC_Os06g04770Os.35344.18.S1_x_at11/116+2076565..2082612transposon protein, putative, Mutator sub-class
LOC_Os06g04770Os.35344.3.S1_x_at9/116+2076565..2082612transposon protein, putative, Mutator sub-class
LOC_Os06g04770OsAffx.22940.5.S1_x_at3/116+2076565..2082612transposon protein, putative, Mutator sub-class
LOC_Os06g04780Os.26713.1.S1_at11/116+2083593..2086278expressed protein
LOC_Os06g04790Os.11192.1.S1_at10/116+2087542..2089992Acid phosphatase 1 precursor, putative, expressed
LOC_Os06g04800Os.54403.1.S1_at11/116+2090290..2093673Proteasome subunit beta type 6 precursor, putative, expressed
LOC_Os06g04810OsAffx.27458.1.S1_at11/116+2094929..2097814Leucine Rich Repeat family protein
LOC_Os06g04820Os.25025.1.S1_at11/116+2099282..2104395Leucine carboxyl methyltransferase family protein, expressed
LOC_Os06g04820Os.22618.1.S1_at2/116+2099282..2104395Leucine carboxyl methyltransferase family protein, expressed
LOC_Os06g04830OsAffx.15265.1.S1_at11/116+2106122..2109064Leucine Rich Repeat family protein, expressed
LOC_Os06g04840Os.53844.1.S1_at11/116+2111540..2115562Leucine Rich Repeat family protein, expressed
LOC_Os06g04850Os.37618.1.S1_at11/116+2122411..2123782Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os06g04850Os.49759.1.S1_x_at1/116+2122411..2123782Homeobox-leucine zipper protein HAT3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27458.1.S1_at--645--9591Chr06:2095372..2095396 (25 bp)
TCATTGGAGTCGCTTGATCTCTCAT
LOC_Os06g04810
OsAffx.27458.1.S1_at--964--6411Chr06:2095357..2095381 (25 bp)
GATCTCTCATGGAACCGACTGTCAG
LOC_Os06g04810
OsAffx.27458.1.S1_at--772--8951Chr06:2095314..2095338 (25 bp)
TGACATCACTGCACTTGTTGAGCCA
LOC_Os06g04810
OsAffx.27458.1.S1_at--464--2531Chr06:2095270..2095294 (25 bp)
AATCTGTCCGGGATGGTACCCCAGG
LOC_Os06g04810
OsAffx.27458.1.S1_at--99--9531Chr06:2095243..2095267 (25 bp)
TCTCAGCTTCAAACCCTTGGTGATG
LOC_Os06g04810
OsAffx.27458.1.S1_at--959--2831Chr06:2095192..2095216 (25 bp)
AAGTATCTCTGCATCCATCTTGCTT
LOC_Os06g04810
OsAffx.27458.1.S1_at--187--9591Chr06:2095175..2095199 (25 bp)
TCTTGCTTCTGGCAGCTGTTTTGAA
LOC_Os06g04810
OsAffx.27458.1.S1_at--1111--7551Chr06:2095076..2095100 (25 bp)
GGGCTTCGGAGTAGGATTTTCTTCT
LOC_Os06g04810
OsAffx.27458.1.S1_at--529--8671Chr06:2095050..2095074 (25 bp)
TGTGGTGGCTTCTTGTGTGCAGCAA
LOC_Os06g04810
OsAffx.27458.1.S1_at--890--2291Chr06:2095015..2095039 (25 bp)
AAGAGGTATTTCCAGTTCGTCGACT
LOC_Os06g04810
OsAffx.27458.1.S1_at--951--6711Chr06:2095001..2095025 (25 bp)
GTTCGTCGACTCCACATGTGAGAAA
LOC_Os06g04810
Target Sequence 
TCATTGGAGTCGCTTGATCTCTCATGGAACCGACTGTCAGGCATAATTCCTGAAAGCATGACATCACTGCACTTGTTGAG
CCACCTGAACATGTCCTACAACAATCTGTCCGGGATGGTACCCCAGGGCTCTCAGCTTCAAACCCTTGGTGATGAAGATC
CATACATCTATGCTGGCAACAAGTATCTCTGCATCCATCTTGCTTCTGGCAGCTGTTTTGAACAGAAAGATAACCATGTT
GATCAAGCAGAGCATAATGATGTCCATGATATCTGGCTGTATATATTTTCAGGATTGGGCTTCGGAGTAGGATTTTCTTC
TGTGTGGTGGCTTCTTGTGTGCAGCAAGGCAGTGGGCAAGAGGTATTTCCAGTTCGTCGACTCCACATGTGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis