Browse Element(s) Details


Os.54403.1.S1_at

Description gb:AK104152.1
DB_XREF= gi:32989361
TID=Os.54403.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-C07, full insert sequence.
FL= gb:AK104152.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0480011/11Proteasome subunit beta type 6 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04750NANA6+2071406..2071852hypothetical protein
LOC_Os06g04760NANA6+2073051..2073482hypothetical protein
LOC_Os06g04770Os.35344.18.S1_x_at11/116+2076565..2082612transposon protein, putative, Mutator sub-class
LOC_Os06g04770Os.35344.3.S1_x_at9/116+2076565..2082612transposon protein, putative, Mutator sub-class
LOC_Os06g04770OsAffx.22940.5.S1_x_at3/116+2076565..2082612transposon protein, putative, Mutator sub-class
LOC_Os06g04780Os.26713.1.S1_at11/116+2083593..2086278expressed protein
LOC_Os06g04790Os.11192.1.S1_at10/116+2087542..2089992Acid phosphatase 1 precursor, putative, expressed
LOC_Os06g04800Os.54403.1.S1_at11/116+2090290..2093673Proteasome subunit beta type 6 precursor, putative, expressed
LOC_Os06g04810OsAffx.27458.1.S1_at11/116+2094929..2097814Leucine Rich Repeat family protein
LOC_Os06g04820Os.25025.1.S1_at11/116+2099282..2104395Leucine carboxyl methyltransferase family protein, expressed
LOC_Os06g04820Os.22618.1.S1_at2/116+2099282..2104395Leucine carboxyl methyltransferase family protein, expressed
LOC_Os06g04830OsAffx.15265.1.S1_at11/116+2106122..2109064Leucine Rich Repeat family protein, expressed
LOC_Os06g04840Os.53844.1.S1_at11/116+2111540..2115562Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54403.1.S1_at--985--6151Chr06:2091395..2091418 (24 bp)
GAGGTTCTGGTTCCAGTTACCTGTA
LOC_Os06g04800
Os.54403.1.S1_at--418--9971Chr06:2091378..2091402 (25 bp)
TACCTGTATGGACTGCTTGACCATG
LOC_Os06g04800
Os.54403.1.S1_at--1143--6691Chr06:2090558..2091068 (25 bp)
GTTCGTACAGTCACCATAAATGCCG
LOC_Os06g04800
Os.54403.1.S1_at--279--7371Chr06:2090506..2090530 (25 bp)
GTGACAAACTACCACTCTGGCATGA
LOC_Os06g04800
Os.54403.1.S1_at--954--6371Chr06:2090429..2090453 (25 bp)
GATCCGATGGTCCAGTGATTCAGCC
LOC_Os06g04800
Os.54403.1.S1_at--211--1111Chr06:2090416..2090440 (25 bp)
AGTGATTCAGCCATACACCACCATT
LOC_Os06g04800
Os.54403.1.S1_at--322--1731Chr06:2090397..2090421 (25 bp)
ACCATTCTTTTCCAACTTTCTACTG
LOC_Os06g04800
Os.54403.1.S1_at--143--5691Chr06:2090367..2090391 (25 bp)
GACTTGCTCTAGATTTTTACTGAAC
LOC_Os06g04800
Os.54403.1.S1_at--361--5731Chr06:2090340..2090364 (25 bp)
GACTGCAGAATTGTTCCACACCGAC
LOC_Os06g04800
Os.54403.1.S1_at--1052--3291Chr06:2090324..2090348 (25 bp)
CACACCGACTTGTTGTTACTCTTTA
LOC_Os06g04800
Os.54403.1.S1_at--328--2031Chr06:2090291..2090315 (25 bp)
ACTTAGTAAATTCTCGGTTGCTCGG
LOC_Os06g04800
Target Sequence 
GAGGTTCTGGTTCCAGTTACCTGTATGGACTGCTTGACCATGAATGGAAGGAGNGCATGTCCCAGGAAGAAGCTGAGAAG
TTTGTGGTGAAGGTGGTTTCCCTTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACAGTCACCATAAATGC
CGATGGTGTTTCGAGGAAATTTCACCCTGGTGACAAACTACCACTCTGGCATGAAGAGATGGAGCCCCAGAACTCGTTGC
TCGACATACTTGCTGCTGGGAACCCTGATCCGATGGTCCAGTGATTCAGCCATACACCACCATTCTTTTCCAACTTTCTA
CTGNATCTGACTTGCTCTAGATTTTTACTGAACTGGACTGCAGAATTGTTCCACACCGACTTGTTGTTACTCTTTATTAT
TTTAACTTAGTAAATTCTCGGTTGCTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis