Browse Element(s) Details


Os.23660.1.S2_at

Description gb:AK121072.1
DB_XREF= gi:37990695
TID=Os.23660.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0585H11.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061N13, full insert sequence.
FL= gb:AK121031.1 gb:AK121072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0189011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01850Os.21876.1.S1_at11/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01850OsAffx.5177.1.S1_at8/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01860Os.38052.1.S1_at11/117+514165..520238expressed protein
LOC_Os07g01870Os.4714.1.S1_at11/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_x_at10/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_at7/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01880Os.36267.1.S2_s_at11/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.36267.1.S1_s_at10/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.11217.1.S1_at1/117+524570..532642Leo1, expressed
LOC_Os07g01890Os.23660.1.S1_at11/117+533901..536093expressed protein
LOC_Os07g01890Os.23660.1.S2_at11/117+533901..536093expressed protein
LOC_Os07g01900Os.44557.1.S1_at11/117+536280..538081expressed protein
LOC_Os07g01910Os.5376.1.S1_at11/117+554328..556672expressed protein
LOC_Os07g01920Os.14676.1.S1_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01920Os.14676.1.S1_a_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23660.1.S2_at--82--10151Chr07:534459..534483 (25 bp)
TATAATTTGCTTTCCCTTGTTCTTT
LOC_Os07g01890
Os.23660.1.S2_at--261--4191Chr07:534446..534470 (25 bp)
CCCTTGTTCTTTCATGATTTTGTGC
LOC_Os07g01890
Os.23660.1.S2_at--829--10031Chr07:534399..534423 (25 bp)
TAGTTGTTTCCGCTTGGGTTATGAT
LOC_Os07g01890
Os.23660.1.S2_at--430--332Chr07:607166..607186 (21 bp)
ATACTTGAGCTTGGATTTGGCATAT
NONE
Os.23660.1.S2_at--377--10471Chr07:534340..534364 (25 bp)
TTACTACTCTCTTACAATGAACCAG
LOC_Os07g01890
Os.23660.1.S2_at--679--8631Chr07:534304..534328 (25 bp)
TGGGTTCCAATACTGCAGAGCTGCT
LOC_Os07g01890
Os.23660.1.S2_at--520--7331Chr07:534276..534300 (25 bp)
GTGCATGTAGGCAGTGTTGCCCTTT
LOC_Os07g01890
Os.23660.1.S2_at--961--3831Chr07:534195..534219 (25 bp)
CTGCATGTTTGGTGTTATTTCTGTT
LOC_Os07g01890
Os.23660.1.S2_at--583--10711Chr07:534157..534181 (25 bp)
TTGCGATGAGCAGGTACTTTTGTTC
LOC_Os07g01890
Os.23660.1.S2_at--924--811Chr07:534090..534114 (25 bp)
ATGGATTACCTGTTGTTTGTCTTTT
LOC_Os07g01890
Os.23660.1.S2_at--750--10471Chr07:534037..534061 (25 bp)
TTAAACTTGTGCTGCTGTTTCAATG
LOC_Os07g01890
Target Sequence 
TATAATTTGCTTTCCCTTGTTCTTTCATGATTTTGTGCTGAAATATTATCAAGGTTGGGATAGTTGTTTCCGCTTGGGTT
ATGATGATACTTGAGCTTGGATTTGGCATATATATTATATTACTACTCTCTTACAATGAACCAGAGGGGAGTGCTTGGGT
TCCAATACTGCAGAGCTGCTAGGGTGCATGTAGGCAGTGTTGCCCTTTTGCCTATAAGATGGGCTTGGTAGCCAAGCGCC
TAGTCGCTCTTGTTTGCTGCCAAGCTGCATGTTTGGTGTTATTTCTGTTAAGTGATGCATAATTGCGATGAGCAGGTACT
TTTGTTCATACTGCAATTTCCATCAGCAGAAATTTCAGTGCTATTAGTTATGGATTACCTGTTGTTTGTCTTTTTTGTTC
AGTTTATTGATTTCTGGTTAAATTAAACTTGTGCTGCTGTTTCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23660.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis