Browse Element(s) Details


Os.23670.1.A1_at

Description gb:CA760241
DB_XREF= gi:25804280
DB_XREF=BR060010A10C09.ab1
CLONE=BR060010A10C09.ab1
TID=Os.23670.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23670 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0757011/11Carboxyl-terminal proteinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07540OsAffx.1956.1.S1_at11/111+3606522..3610484D111/G-patch domain-containing protein, putative
LOC_Os01g07550NANA1+3613300..3616018hypothetical protein
LOC_Os01g07560OsAffx.23150.1.S1_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07560Os.16980.1.S1_s_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07570Os.20276.1.S1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570Os.23670.1.A1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570OsAffx.661.1.S1_x_at1/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07579NANA1+3638973..3639226NA
LOC_Os01g07590Os.15606.1.S1_at11/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07590Os.15606.1.S2_at6/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07600Os.54010.1.S1_at11/111+3649075..3653252expressed protein
LOC_Os01g07600OsAffx.23151.1.S1_x_at5/111+3649075..3653252expressed protein
LOC_Os01g07610Os.53998.1.S1_at11/111+3658490..3661001pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23670.1.A1_at--258--1171Chr01:3635022..3635046 (25 bp)
AGTCAACCAACTCGCCGGTCACCGG
LOC_Os01g07570
Os.23670.1.A1_at--835--2691Chr01:3634981..3635005 (25 bp)
AAGCTCGCCCTCCATGTATATCATT
LOC_Os01g07570
Os.23670.1.A1_at--861--4791Chr01:3634979..3635003 (25 bp)
GCTCGCCCTCCATGTATATCATTCT
LOC_Os01g07570
Os.23670.1.A1_at--854--9331Chr01:3634977..3635001 (25 bp)
TCGCCCTCCATGTATATCATTCTGC
LOC_Os01g07570
Os.23670.1.A1_at--42--4551Chr01:3634975..3634999 (25 bp)
GCCCTCCATGTATATCATTCTGCAT
LOC_Os01g07570
Os.23670.1.A1_at--116--4191Chr01:3634974..3634998 (25 bp)
CCCTCCATGTATATCATTCTGCATC
LOC_Os01g07570
Os.23670.1.A1_at--964--3811Chr01:3634972..3634996 (25 bp)
CTCCATGTATATCATTCTGCATCAT
LOC_Os01g07570
Os.23670.1.A1_at--730--9231Chr01:3634971..3634995 (25 bp)
TCCATGTATATCATTCTGCATCATC
LOC_Os01g07570
Os.23670.1.A1_at--451--3511Chr01:3634969..3634993 (25 bp)
CATGTATATCATTCTGCATCATCAA
LOC_Os01g07570
Os.23670.1.A1_at--352--371Chr01:3634949..3634973 (25 bp)
ATCAATTCATCATTATTGGTATTGC
LOC_Os01g07570
Os.23670.1.A1_at--69--131Chr01:3634945..3634969 (25 bp)
ATTCATCATTATTGGTATTGCAAAA
LOC_Os01g07570
Target Sequence 
AGTCAACCAACTCGCCGGTCACCGGCGAGCTCGCCGTCGGCAAGCTCGCCCTCCATGTATATCATTCTGCATCATCAATT
CATCATTATTGGTATTGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23670.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis