Browse Element(s) Details


Os.23678.1.A1_at

Description gb:AK070373.1
DB_XREF= gi:32980397
TID=Os.23678.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054E09, full insert sequence.
FL= gb:AK070373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2178911/11glycosyl hydrolase family protein 43, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21760NANA12+12241473..12241688hypothetical protein
LOC_Os12g21770OsAffx.10496.1.S1_at1/1112+12244529..12247245retrotransposon protein, putative, unclassified
LOC_Os12g21780OsAffx.22368.1.S1_x_at1/1112+12247748..12253875retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g21789OsAffx.31826.1.S1_x_at11/1112+12262068..12264856glycosyl hydrolase family protein 43, putative, expressed
LOC_Os12g21789Os.23678.1.A1_at11/1112+12262068..12264856glycosyl hydrolase family protein 43, putative, expressed
LOC_Os12g21798Os.4690.1.S1_at11/1112+12267896..1227170540S ribosomal protein S3a, putative, expressed
LOC_Os12g21810OsAffx.7651.1.S1_at11/1112+12273945..12275854hypothetical protein
LOC_Os12g21810Os.50737.1.S1_at1/1112+12273945..12275854hypothetical protein
LOC_Os12g21820OsAffx.19542.3.S1_x_at7/1112+12279169..12284086retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g21830NANA12+12285139..12290198retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23678.1.A1_at--471--8011Chr12:12262337..12262361 (25 bp)
GGAGGGACTCCTGAAATTTACTTGA
LOC_Os12g21789
Os.23678.1.A1_at--91--5731Chr12:12262332..12262356 (25 bp)
GACTCCTGAAATTTACTTGACTGAA
LOC_Os12g21789
Os.23678.1.A1_at--1060--10171Chr12:12262302..12262326 (25 bp)
TATACAATTTATACATGGTGGTCAT
LOC_Os12g21789
Os.23678.1.A1_at--237--9991Chr12:12262264..12262288 (25 bp)
TACCAAATTATTGACACGACACATT
LOC_Os12g21789
Os.23678.1.A1_at--942--5631Chr12:12262252..12262276 (25 bp)
GACACGACACATTGGAGTGCACTGT
LOC_Os12g21789
Os.23678.1.A1_at--70--1131Chr12:12262237..12262261 (25 bp)
AGTGCACTGTATAGATCAGGTTTAG
LOC_Os12g21789
Os.23678.1.A1_at--337--9631Chr12:12262222..12262246 (25 bp)
TCAGGTTTAGATCAGGTAGAGTTGT
LOC_Os12g21789
Os.23678.1.A1_at--641--10351Chr12:12262185..12262209 (25 bp)
TTTTTGGTCTGTTCTTAAATCACAT
LOC_Os12g21789
Os.23678.1.A1_at--199--391Chr12:12262167..12262191 (25 bp)
ATCACATATATGGTTGTGGGCTTGT
LOC_Os12g21789
Os.23678.1.A1_at--1093--7731Chr12:12262128..12262152 (25 bp)
GGTGTGGTGTTGATTATTTTTTCCT
LOC_Os12g21789
Os.23678.1.A1_at--81--9711Chr12:12262070..12262094 (25 bp)
TCAAATATGGGTTTGTCTTGTGGTC
LOC_Os12g21789
Target Sequence 
GGAGGGACTCCTGAAATTTACTTGACTGAAATTGGTATACAATTTATACATGGTGGTCATNCTAGAGATACCATACCAAA
TTATTGACACGACACATTGGAGTGCACTGTATAGATCAGGTTTAGATCAGGTAGAGTTGTAAATGTGCAGTTTTTTTGGT
CTGTTCTTAAATCACATATATGGTTGTGGGCTTGTGGCCTGTTGGGCGAGGTGTGGTGTTGATTATTTTTTCCTTTTACT
GAGAATAATAATGTAGATGCANANNTATCAAATATGGGTTTGTCTTGTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23678.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis