Browse Element(s) Details


OsAffx.31826.1.S1_x_at

Description tigr:9640.m02056
TID=OsAffx.31826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal S3Ae family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2178911/11glycosyl hydrolase family protein 43, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21760NANA12+12241473..12241688hypothetical protein
LOC_Os12g21770OsAffx.10496.1.S1_at1/1112+12244529..12247245retrotransposon protein, putative, unclassified
LOC_Os12g21780OsAffx.22368.1.S1_x_at1/1112+12247748..12253875retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g21789OsAffx.31826.1.S1_x_at11/1112+12262068..12264856glycosyl hydrolase family protein 43, putative, expressed
LOC_Os12g21789Os.23678.1.A1_at11/1112+12262068..12264856glycosyl hydrolase family protein 43, putative, expressed
LOC_Os12g21798Os.4690.1.S1_at11/1112+12267896..1227170540S ribosomal protein S3a, putative, expressed
LOC_Os12g21810OsAffx.7651.1.S1_at11/1112+12273945..12275854hypothetical protein
LOC_Os12g21810Os.50737.1.S1_at1/1112+12273945..12275854hypothetical protein
LOC_Os12g21820OsAffx.19542.3.S1_x_at7/1112+12279169..12284086retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g21830NANA12+12285139..12290198retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31826.1.S1_x_at--44--891Chr12:12262850..12262874 (25 bp)
AGGCCTACCTGATATATTCTTCTGA
LOC_Os12g21789
OsAffx.31826.1.S1_x_at--204--1651Chr12:12262818..12262842 (25 bp)
AGCGAGCTCCACATTGGTCAGTTAA
LOC_Os12g21789
OsAffx.31826.1.S1_x_at--1129--5291Chr12:12262760..12262784 (25 bp)
GAAGGCTTCTCATTGCACAACATCG
LOC_Os12g21789
OsAffx.31826.1.S1_x_at--837--2691Chr12:12262733..12262757 (25 bp)
AAGCTCCTGCGCTTTTCAAGTATGA
LOC_Os12g21789
OsAffx.31826.1.S1_x_at--698--351Chr12:12262692..12262716 (25 bp)
ATAACCTCTGGTTGCACTGGCTGGG
LOC_Os12g21789
OsAffx.31826.1.S1_x_at--155--7031Chr12:12262550..12262574 (25 bp)
GTACATTTGTGTTGCCGATTCCAGG
LOC_Os12g21789
OsAffx.31826.1.S1_x_at--854--951Chr12:12262528..12262552 (25 bp)
AGGACTGTCAGGTTCATTCATCTTC
LOC_Os12g21789
OsAffx.31826.1.S1_x_at--71--131Chr12:12262513..12262537 (25 bp)
ATTCATCTTCATGGCTGATCGGTGG
LOC_Os12g21789
OsAffx.31826.1.S1_x_at--790--6571Chr12:12262470..12262494 (25 bp)
GATTCGCGATATGTATGGCTGCCTT
LOC_Os12g21789
OsAffx.31826.1.S1_x_at--1091--1251Chr12:12262414..12262438 (25 bp)
AGATTACAGCTTCATGTTCCCTCTT
LOC_Os12g21789
OsAffx.31826.1.S1_x_at--678--4251Chr12:12262384..12262408 (25 bp)
CCGGGTGTCGATTTACTGGCACAGA
LOC_Os12g21789
Target Sequence 
AGGCCTACCTGATATATTCTTCTGAGGACAACAGCGAGCTCCACATTGGTCAGTTAACTGATGACTACCTTGATGTAACT
GATAATATGCGAAGGCTTCTCATTGCACAACATCGAGAAGCTCCTGCGCTTTTCAAGTATGAGGGCACCTACTACATGAT
AACCTCTGGTTGCACTGGCTGGGCACCAAACACTGCACTAGCTCATGCGGCGACAGCAATAATGGGACCTTGGGAGACGC
TGGGAAATCCTTGTGTGGGAGGGAATGACATATTCAGATCAACAACATTCTTCTCCCAGAGTACATTTGTGTTGCCGATT
CCAGGACTGTCAGGTTCATTCATCTTCATGGCTGATCGGTGGAGCCCATCCGAGCTGAGAGATTCGCGATATGTATGGCT
GCCTTTGACAGTAGGTGGACTACCTGATGAGGCTGCAGATTACAGCTTCATGTTCCCTCTTTGGTCCCGGGTGTCGATTT
ACTGGCACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31826.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis