Browse Element(s) Details


Os.23846.1.A1_s_at

Description gb:CA760647
DB_XREF= gi:25804686
DB_XREF=BR060006B20D08.ab1
CLONE=BR060006B20D08.ab1
TID=Os.23846.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23846 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3516011/11eukaryotic translation initiation factor SUI1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35140Os.21860.1.S1_at11/112+21092322..21098164Auxin response factor 1, putative, expressed
LOC_Os02g35144Os.23148.1.A1_at10/112+21098833..21102186Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g35150Os.49867.1.S1_at11/112+21104860..21109970Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g35160Os.23846.1.A1_s_at11/112+21110059..21116258eukaryotic translation initiation factor SUI1 family protein, putative, expressed
LOC_Os02g35160Os.25492.1.S1_at11/112+21110059..21116258eukaryotic translation initiation factor SUI1 family protein, putative, expressed
LOC_Os02g35170Os.11754.1.A1_at11/112+21116431..21119266oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g35180Os.23942.1.A1_at11/112+21122770..21125500response regulator 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23846.1.A1_s_at--932--2131Chr02:21110247..21110271 (25 bp)
ACAGAAAAATGAGTAGGGCTGTTCT
LOC_Os02g35160
Os.23846.1.A1_s_at--1049--3871Chr02:21110217..21110241 (25 bp)
CTGTCTGAAATTTTGGTGTGTACCC
LOC_Os02g35160
Os.23846.1.A1_s_at--877--9472Chr05:14453636..14454100 (25 bp)
TCTGAAATTTTGGTGTGTACCCGTT
NONE
Os.23846.1.A1_s_at--246--10251Chr02:21110184..21110208 (25 bp)
TTTGTAACGTTCTTTTGGTGCCGTG
LOC_Os02g35160
Os.23846.1.A1_s_at--1112--9791Chr02:21110180..21110204 (25 bp)
TAACGTTCTTTTGGTGCCGTGTTCA
LOC_Os02g35160
Os.23846.1.A1_s_at--637--4011Chr02:21110177..21110201 (25 bp)
CGTTCTTTTGGTGCCGTGTTCATTC
LOC_Os02g35160
Os.23846.1.A1_s_at--303--1731Chr02:21110140..21110164 (25 bp)
ACCTTTTTTGTGTGAGATACGTGTT
LOC_Os02g35160
Os.23846.1.A1_s_at--754--6031Chr02:21110127..21110151 (25 bp)
GAGATACGTGTTACGTTTCGTTAGT
LOC_Os02g35160
Os.23846.1.A1_s_at--683--6751Chr02:21110118..21110142 (25 bp)
GTTACGTTTCGTTAGTGACAGACAG
LOC_Os02g35160
Os.23846.1.A1_s_at--184--7371Chr02:21110104..21110128 (25 bp)
GTGACAGACAGGGTTTGACGCTTTT
LOC_Os02g35160
Os.23846.1.A1_s_at--552--3451Chr02:21110096..21110120 (25 bp)
CAGGGTTTGACGCTTTTTAACATGG
LOC_Os02g35160
Target Sequence 
ACAGAAAAATGAGTAGGGCTGTTCTGTGACTTCTGTCTGAAATTTTGGTGTGTACCCGTTCCTTTTTTGTAACGTTCTTT
TGGTGCCGTGTTCATTCTTCTGAAAAAGAACCTTTTTTGTGTGAGATACGTGTTACGTTTCGTTAGTGACAGACAGGGTT
TGACGCTTTTTAACATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23846.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis