Browse Element(s) Details


Os.24034.1.S1_a_at

Description gb:AK119315.1
DB_XREF= gi:37988938
TID=Os.24034.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA polymerase I (P0648C09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-H04, full insert sequence.
FL= gb:AK119315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6540011/115'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65370Os.37103.1.S1_at11/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65370Os.57514.1.S1_x_at7/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65380Os.7053.1.S1_s_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65380Os.7053.1.S1_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65400Os.24034.1.S1_a_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.3.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.2.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65410Os.5420.1.S1_at11/111+38289408..38293657Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os01g65420Os.37438.1.S1_at11/111+38295821..38297183expressed protein
LOC_Os01g65440Os.26484.1.S1_at11/111+38309698..38312558universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24034.1.S1_a_at--204--2051Chr01:38282509..38282533 (25 bp)
ACTTTCTCGGGCAATCGTGAGTCAG
LOC_Os01g65400
Os.24034.1.S1_a_at--667--2031Chr01:38282445..38282469 (25 bp)
ACTTAACCCAGCTCTTGAGTCGATG
LOC_Os01g65400
Os.24034.1.S1_a_at--602--6671Chr01:38282408..38282432 (25 bp)
GTTGCTCTGGCACAAAATATAGTAC
LOC_Os01g65400
Os.24034.1.S1_a_at--102--6531Chr01:38282342..38282366 (25 bp)
GATTTACAATCGGTCATGATGATCA
LOC_Os01g65400
Os.24034.1.S1_a_at--310--5891Chr01:38282281..38282305 (25 bp)
GAGCGAGCACCGAACAGAACTTTTG
LOC_Os01g65400
Os.24034.1.S1_a_at--771--2511Chr01:38282264..38282288 (25 bp)
AACTTTTGCAGTTCCCGAAAACATG
LOC_Os01g65400
Os.24034.1.S1_a_at--1060--6951Chr01:38282065..38282089 (25 bp)
GTAGCACTGAAAACATCTCCTTTAG
LOC_Os01g65400
Os.24034.1.S1_a_at--545--3551Chr01:38282052..38282076 (25 bp)
CATCTCCTTTAGCACCTATGCATAA
LOC_Os01g65400
Os.24034.1.S1_a_at--776--5531Chr01:38282024..38282048 (25 bp)
GAAACACGCTACTTGTTGGCGGTCT
LOC_Os01g65400
Os.24034.1.S1_a_at--975--3911Chr01:38282001..38282025 (25 bp)
CTGGCTGGCAGATTTGGGTACCCAA
LOC_Os01g65400
Os.24034.1.S1_a_at--436--2291Chr01:38281942..38281966 (25 bp)
AAATGAAGTGGCTCACTTATCCTCA
LOC_Os01g65400
Target Sequence 
ACTTTCTCGGGCAATCGTGAGTCAGTTTTNTTCAGCCTGTTTCAGAATGTTGTTTTACTGTCTAACTTAACCCAGCTCTT
GAGTCGATGAGTGGTACTTCTGTTGCTCTGGCACAAAATATAGTACTGTCAAATCTGCAGGTACATAATTAACGACAGGA
GATTTAGGATTTACAATCGGTCATGATGATCAATCTGCAGTGAGGATGCAAGAGTTGAACTGGAGAGCGAGCGAGCACCG
AACAGAACTTTTGCAGTTCCCGAAAACATGGTATGCTTTAGGTTTTCGCCTTTCCCTGCTTTCTTTCTTCACTCACTACT
AGTACAACTTTGGAGCTGGAGTACAAAACGATTCACTTTCATTTCCTAGCTGTTATATTCTCGCCTTTATACCTCGCCAA
ATGGAGTGCTAATCCTAATTGCGGTTGCCTAATTGGGAGCAGGAGTAGCACTGAAAACATCTCCTTTAGCACCTATGCAT
AATGCGAAACACGCTACTTGTTGGCGGTCTGGCTGGCAGATTTGGGTACCCAAATGTATCTGGTTGTACCTGGTCTACTG
ATAGTTGAAATGAAGTGGCTCACTTATCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24034.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis