Browse Element(s) Details


Os.24034.2.S1_x_at

Description gb:AK065916.1
DB_XREF= gi:32975934
TID=Os.24034.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA polymerase I (P0648C09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045N02, full insert sequence.
FL= gb:AK065916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6540011/115'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65370Os.37103.1.S1_at11/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65370Os.57514.1.S1_x_at7/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65380Os.7053.1.S1_s_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65380Os.7053.1.S1_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65400Os.24034.1.S1_a_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.3.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.2.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65410Os.5420.1.S1_at11/111+38289408..38293657Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os01g65420Os.37438.1.S1_at11/111+38295821..38297183expressed protein
LOC_Os01g65440Os.26484.1.S1_at11/111+38309698..38312558universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24034.2.S1_x_at--274--2871Chr01:38284887..38284911 (25 bp)
AAGTGTGACCCAACCGCAGATTTGA
LOC_Os01g65400
Os.24034.2.S1_x_at--449--5871Chr01:38284761..38284888 (25 bp)
GAGCCTCAGGTGCTTCATAGGTGAT
LOC_Os01g65400
Os.24034.2.S1_x_at--280--5231Chr01:38284717..38284741 (25 bp)
GAATACAGCACCTTGTTCCTGGTTT
LOC_Os01g65400
Os.24034.2.S1_x_at--227--2931Chr01:38284607..38284631 (25 bp)
AAGGACTATGCCCAGGATGCTCTAG
LOC_Os01g65400
Os.24034.2.S1_x_at--305--6231Chr01:38284289..38284313 (25 bp)
GATGGTTATCCACAAGGGACTCTTG
LOC_Os01g65400
Os.24034.2.S1_x_at--447--7631Chr01:38284274..38284298 (25 bp)
GGGACTCTTGCAACGACAGCAGTGT
LOC_Os01g65400
Os.24034.2.S1_x_at--710--2151Chr01:38284259..38284283 (25 bp)
ACAGCAGTGTTTTGTCTGACTTCAT
LOC_Os01g65400
Os.24034.2.S1_x_at--779--2371Chr01:38284201..38284225 (25 bp)
AAACTCAAATTCTGTACCGACCATG
LOC_Os01g65400
Os.24034.2.S1_x_at--285--9971Chr01:38284187..38284211 (25 bp)
TACCGACCATGTTTCTTCATCACAA
LOC_Os01g65400
Os.24034.2.S1_x_at--1154--2251Chr01:38284109..38284133 (25 bp)
AAATAGCTAGTTCCTGTCACTCTGA
LOC_Os01g65400
Os.24034.2.S1_x_at--934--8691Chr01:38284083..38284107 (25 bp)
TGTGCCGTTCACTTGTTTTGGTATT
LOC_Os01g65400
Target Sequence 
AAGTGTGACCCAACCGCAGATTTGAGCCTCAGGTGCTTCATAGGTGATGAAGCAGATGGTATTCCAGGAATACAGCACCT
TGTTCCTGGTTTTGGTCGGAAAACTGCAGTGAAACTTCTAAAGAAACATGGTTCATTGGAAAATTTGCTTAATACAGCTG
CAGTTAGAACTGTTGGCAAGGACTATGCCCAGGATGCTCTAGTTAAGCATGCAGATTACCTGCGGAAAAATTATGAAGTT
CTCAGCTTGAAGAGGGATGTAAAAGTTCAGCTTGATGACAGATGGTTATCCACAAGGGACTCTTGCAACGACAGCAGTGT
TTTGTCTGACTTCATCCTTAAATTTAACGAAGGGCAGAATATCAGGTAAAACTCAAATTCTGTACCGACCATGTTTCTTC
ATCACAATCTCTATGTAAATTCAATAAAAACGAGGAGTTGGTAGTTGAAATATTAGTTAGAAATAGCTAGTTCCTGTCAC
TCTGATTGTGCCGTTCACTTGTTTTGGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24034.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis