Browse Element(s) Details


Os.24034.3.S1_x_at

Description gb:AK105063.1
DB_XREF= gi:32990272
TID=Os.24034.3
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA polymerase I (P0648C09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D07, full insert sequence.
FL= gb:AK105063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6540011/115'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65370Os.37103.1.S1_at11/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65370Os.57514.1.S1_x_at7/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65380Os.7053.1.S1_s_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65380Os.7053.1.S1_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65400Os.24034.1.S1_a_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.3.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.2.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65410Os.5420.1.S1_at11/111+38289408..38293657Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os01g65420Os.37438.1.S1_at11/111+38295821..38297183expressed protein
LOC_Os01g65440Os.26484.1.S1_at11/111+38309698..38312558universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24034.3.S1_x_at--127--9251Chr01:38283802..38283826 (25 bp)
TCCTTGCTACGGGATTCCTGATAAG
LOC_Os01g65400
Os.24034.3.S1_x_at--279--1211Chr01:38283779..38283803 (25 bp)
AGTTATTCTTCTTTTAGCGGCCTAT
LOC_Os01g65400
Os.24034.3.S1_x_at--15--9811Chr01:38283530..38283554 (25 bp)
TAACCAAGTACCAACCCACATTTTG
LOC_Os01g65400
Os.24034.3.S1_x_at--927--3851Chr01:38283474..38283498 (25 bp)
CTGAGTCATCAAACAGCTGCCTACT
LOC_Os01g65400
Os.24034.3.S1_x_at--685--9191Chr01:38283457..38283481 (25 bp)
TGCCTACTCAATTCTTCTCGTCTGT
LOC_Os01g65400
Os.24034.3.S1_x_at--472--9511Chr01:38283442..38283466 (25 bp)
TCTCGTCTGTCACACTATCAACATA
LOC_Os01g65400
Os.24034.3.S1_x_at--808--10111Chr01:38283348..38283372 (25 bp)
TATGAAGTGTCCTCCGATGCTTTTA
LOC_Os01g65400
Os.24034.3.S1_x_at--432--8571Chr01:38283315..38283339 (25 bp)
TGGATCTTCAGGGTTTTTTCTTTCT
LOC_Os01g65400
Os.24034.3.S1_x_at--558--6812Chr12:14847885..14848376 (25 bp)
GTTTTTTCTTTCTGGCATTCTGCAA
NONE
Os.24034.3.S1_x_at--177--10011Chr01:38283265..38283289 (25 bp)
TAGCGGCAGTTTAGGGTACTACTCC
LOC_Os01g65400
Os.24034.3.S1_x_at--447--9893Chr01:28482741..28482886 (24 bp)
TACTCCCTCCGGTCACAAATAAATA
NONE
Target Sequence 
TCCTTGCTACGGGATTCCTGATAAGTTATTCTTCTTTTAGCGGCCTATTGNTGTAGTATCATTTCAGAAATGCAGNTCAT
TATAGATGCAGAGTAGAAATCNCATTGNCAGCATTACAGTCGNTTTNCCCCAAGTCACTCATGCCCTGGGCTAGATATAG
CATACGTGAGATGNACTGNCTCTTCAGTTTGGNTAATGTTGNAGNCTANNGCTAGGACTGNAANTTTGNATCANTAGCCG
TTCAAGGTTCTAGAAGAGCAAGGAGTAGTATCTAACCAAGTACCAACCCACATTTTGATACCAAGTGCGTGGTTATGTGC
AAGCTATACTGAGTCATCAAACAGCTGCCTACTCAATTCTTCTCGTCTGTCACACTATCAACATAGCTTAAACCAAGAAG
ATTCAAGAAGTAGCAAAGTGTGCATTCTGAAGGGCAGTCGTGATGATATATTGATATGAAGTGTCCTCCGATGCTTTTAG
TGAGAATTGGATCTTCAGGGTTTTTTCTTTCTGGCATTCTGCAATGTTATTAAGGTGTAGCGGCAGTTTAGGGTACTACT
CCCTCCGGTCACAAATAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24034.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis