Browse Element(s) Details


Os.24178.1.A1_at

Description gb:AK071824.1
DB_XREF= gi:32981847
TID=Os.24178.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023119J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023119J19, full insert sequence.
FL= gb:AK071824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0653010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06480Os.49722.2.S1_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06480Os.49722.2.S1_x_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06490Os.9469.1.S1_at11/115+3320083..3322613RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os05g06500Os.10691.1.S1_at10/115+3323165..3325263universal stress protein family protein, expressed
LOC_Os05g06510Os.37384.1.S1_s_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.19268.1.S1_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.37384.1.S1_x_at10/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06520NANA5+3333562..3333816Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g06530Os.24178.1.A1_at10/115+3339204..3342505expressed protein
LOC_Os05g06530Os.24178.1.A1_x_at9/115+3339204..3342505expressed protein
LOC_Os05g06530Os.11641.1.S1_at7/115+3339204..3342505expressed protein
LOC_Os05g06540Os.24080.1.A1_at1/115+3347106..3351035hypothetical protein
LOC_Os05g06540Os.38041.1.S1_at1/115+3347106..3351035hypothetical protein
LOC_Os05g06550NANA5+3357830..3358280hypothetical protein
LOC_Os05g06560OsAffx.4263.1.S1_at11/115+3360749..3362292hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24178.1.A1_at--1040--10291NONE
TTTCCTCTTCCTTGGCTGTGTTGCC
NONE
Os.24178.1.A1_at--804--2971Chr05:3341802..3341826 (25 bp)
AATGGTGGCTTCATTGTTGAACGCA
LOC_Os05g06530
Os.24178.1.A1_at--769--7511Chr05:3341806..3341830 (25 bp)
GTGGCTTCATTGTTGAACGCATTGC
LOC_Os05g06530
Os.24178.1.A1_at--903--3651Chr05:3341810..3341834 (25 bp)
CTTCATTGTTGAACGCATTGCTGAT
LOC_Os05g06530
Os.24178.1.A1_at--489--8811Chr05:3341816..3341840 (25 bp)
TGTTGAACGCATTGCTGATGATTCT
LOC_Os05g06530
Os.24178.1.A1_at--935--7471Chr05:3341894..3341915 (22 bp)
GTGTGGGACTACTTTGCCTGAGATT
LOC_Os05g06530
Os.24178.1.A1_at--335--8631Chr05:3341897..3341998 (25 bp)
TGGGACTACTTTGCCTGAGATTGAA
LOC_Os05g06530
Os.24178.1.A1_at--890--5631Chr05:3342423..3342447 (25 bp)
GACACGATCTTTTGTCGGGGCGTTT
LOC_Os05g06530
Os.24178.1.A1_at--571--10231Chr05:3342457..3342481 (25 bp)
TTTGGCTGGCTGAACTATGCTAATA
LOC_Os05g06530
Os.24178.1.A1_at--1120--8331Chr05:3342460..3342484 (25 bp)
GGCTGGCTGAACTATGCTAATATTA
LOC_Os05g06530
Os.24178.1.A1_at--197--3891Chr05:3342462..3342486 (25 bp)
CTGGCTGAACTATGCTAATATTAAT
LOC_Os05g06530
Target Sequence 
TTTCCTCTTCCTTGGCTGTGTTGCCCGCCCTGTGTTTGAGGTGGATTTAAAAAGTGTGGAACTAGCTGGTGTGTTATTCC
GGGAGGAGCTCTCTCTGAAACATAACATCAATGGTGGCTTCATTGTTGAACGCATTGCTGATGATTCTGCTCTTGAGCAT
CTTGGTGTTAGACGGGGTGACGTGATCTTTTTTGAGGACGAGTGTGGGACTACTTTGCCTGAGATTGAAGATTATCTCCT
TTCTCTTGGTTGGAGATACCTGCAGGGGATGAAGTCGATGGTTCTCAAGTTGCTAGTACATGACATTGAAGGTCCATGTA
AGGTGACAATTACCTTGCCCTTAGAGTTTTCTGTCGATTCAGGAAAGGTAGCCCGATGGAGGATGGCTTGAAGATGTACA
GCAAGACTGAAGTTACCTAGAGATGATAATTTTGTGAATGTTAGTAACTTGAATGTTCTTTGACACGATCTTTTGTCGGG
GCGTTTAACCCTAATTTTGGCTGGCTGAACTATGCTAATATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24178.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis