Browse Element(s) Details


Os.24180.1.A1_s_at

Description gb:CA761349
DB_XREF= gi:25805388
DB_XREF=BR060009B10F08.ab1
CLONE=BR060009B10F08.ab1
TID=Os.24180.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24180 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3692011/11calmodulin-binding protein, putative, expressed
LOC_Os05g497701/11CTP synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36900OsAffx.7815.1.S1_at11/1112+22583439..22588295fiber protein Fb2, putative, expressed
LOC_Os12g36910Os.17887.1.S1_at10/1112+22595349..22599454calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.50572.1.S1_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.24180.1.A1_s_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36930Os.51798.1.S1_at1/1112+22607943..22609245hypothetical protein
LOC_Os12g36940Os.9764.1.S1_at11/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36940Os.52150.1.S1_at1/1112+22614559..22622705calmodulin-binding protein, putative, expressed
LOC_Os12g36950Os.27769.1.S1_a_at11/1112+22622813..22629039CTP synthase, putative, expressed
LOC_Os12g36960NANA12+22629276..22629782hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003883molecular_functionCTP synthase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24180.1.A1_s_at--30--7971Chr12:22606333..22606357 (25 bp)
GGATCAGACCACAATAACAACTGTT
LOC_Os12g36920
Os.24180.1.A1_s_at--1151--2451Chr12:22606361..22606385 (25 bp)
AACAAATTGACAGTGCAGTTCTTCT
LOC_Os12g36920
Os.24180.1.A1_s_at--90--3451Chr12:22606416..22606440 (25 bp)
CAGTTATCAGGTTGCTGCACAGCTA
LOC_Os12g36920
Os.24180.1.A1_s_at--778--6671Chr12:22606426..22606450 (25 bp)
GTTGCTGCACAGCTATGTACTCAGT
LOC_Os12g36920
Os.24180.1.A1_s_at--133--1571Chr12:22606436..22606460 (25 bp)
AGCTATGTACTCAGTTGTCTCGTCA
LOC_Os12g36920
Os.24180.1.A1_s_at--92--1251Chr12:22606448..22606472 (25 bp)
AGTTGTCTCGTCAGTGTAGTGTACA
LOC_Os12g36920
Os.24180.1.A1_s_at--716--10071Chr12:22606464..22606488 (25 bp)
TAGTGTACAGATTTGCAGTGTGCAA
LOC_Os12g36920
Os.24180.1.A1_s_at--704--5191Chr12:22606485..22606509 (25 bp)
GCAATTCTGATTTAGGTTGTGGCTA
LOC_Os12g36920
Os.24180.1.A1_s_at--791--10831Chr12:22606501..22606525 (25 bp)
TTGTGGCTATCTTATTCATCTGCAG
LOC_Os12g36920
Os.24180.1.A1_s_at--340--431Chr12:22606526..22606550 (25 bp)
ATCATTAGTGATCTACGGTGTGTTT
LOC_Os12g36920
Os.24180.1.A1_s_at--1066--3452Chr12:22606581..22606605 (25 bp)
CAGGTGGTATGTCTGCTGGCCAAAA
LOC_Os12g36920
Target Sequence 
GGATCAGACCACAATAACAACTGTTAGTAACAAATTGACAGTGCAGTTCTTCTATGCCAAAAAAAGAAAAAAAAAGGCAA
TGCAGTTATCAGGTTGCTGCACAGCTATGTACTCAGTTGTCTCGTCAGTGTAGTGTACAGATTTGCAGTGTGCAATTCTG
ATTTAGGTTGTGGCTATCTTATTCATCTGCAGATCATTAGTGATCTACGGTGTGTTTGTAATGTGTAACTGTAAGTCTGT
AACAATGCAGGTGGTATGTCTGCTGGCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24180.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis