Browse Element(s) Details


Os.24190.1.A1_at

Description gb:CA761366
DB_XREF= gi:25805405
DB_XREF=BR060009B20E09.ab1
CLONE=BR060009B20E09.ab1
TID=Os.24190.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24190 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g083207/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08290Os.27415.1.S1_at11/117+4225000..4228382expressed protein
LOC_Os07g08300NANA7+4238383..4245863retrotransposon protein, putative, unclassified, expressed
LOC_Os07g08310OsAffx.22176.1.S1_at1/117+4246819..4250370major facilitator superfamily antiporter, putative
LOC_Os07g08310OsAffx.22176.1.S1_x_at1/117+4246819..4250370major facilitator superfamily antiporter, putative
LOC_Os07g08320OsAffx.16154.1.S1_at11/117+4252196..4257655RNA recognition motif family protein
LOC_Os07g08320Os.24190.1.A1_at7/117+4252196..4257655RNA recognition motif family protein
LOC_Os07g08330Os.11425.1.S1_at11/117+4261472..426401760S ribosomal protein L4, putative, expressed
LOC_Os07g08340Os.9225.1.S1_at11/117+4265180..4269784Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os07g08350Os.56324.1.S1_at11/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g08350Os.5608.3.S1_x_at1/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24190.1.A1_at--1160--9251NONE
TCCTCCACACCTAGCATCTTATTAT
NONE
Os.24190.1.A1_at--39--8271NONE
GGCATGGCAAAAAATCAGGTTGACT
NONE
Os.24190.1.A1_at--495--7871NONE
GGTTTTTGTGGATTTGCTACGTGAG
NONE
Os.24190.1.A1_at--116--7931NONE
GGATTTGCTACGTGAGAAGTCCGTA
NONE
Os.24190.1.A1_at--755--5311Chr07:4252568..4252592 (25 bp)
GAAGTCCGTAGTTAAACCATGGCAG
LOC_Os07g08320
Os.24190.1.A1_at--689--7651Chr07:4252476..4252500 (25 bp)
GGGATGATAGTCTTAGTTTGGAACA
LOC_Os07g08320
Os.24190.1.A1_at--445--191Chr07:4252446..4252470 (25 bp)
ATTTCAGTTGGAGTTTTGCTTTAGC
LOC_Os07g08320
Os.24190.1.A1_at--128--231Chr07:4252418..4252442 (25 bp)
ATATTTCCCTGTAGGGATCCATGGA
LOC_Os07g08320
Os.24190.1.A1_at--461--6351Chr07:4252403..4252427 (25 bp)
GATCCATGGAATTCCCGTGTTCCAA
LOC_Os07g08320
Os.24190.1.A1_at--405--1051Chr07:4252355..4252379 (25 bp)
AGGTGTTGCGTTTGTCTTAAACTGA
LOC_Os07g08320
Os.24190.1.A1_at--129--7151Chr07:4252342..4252366 (25 bp)
GTCTTAAACTGATATATGGCCATTG
LOC_Os07g08320
Target Sequence 
TCCTCCACACCTAGCATCTTATTATGGACTANCAGGAACACCAATCGGTANTCAGGTGAGGCAATCAAGTTCTCGCCAAC
CAGCACAGTCCTATCGAAGCAGGCATGGCAAAAAATCAGGTTGACTNCATGATAATGACGAATATTTTCCAACNCAGATG
ATGGTTTTTGTGGATTTGCTACGTGAGAAGTCCGTAGTTAAACCATGGCAGAAGACTGAAAACTTAAAGCTAATGGCATC
NCTATTGGTNCATTATNCAGTTTAGTGAATGCTCTTTTGGGGATGATAGTCTTAGTTTGGAACATGGGAATTTCAGTTGG
AGTTTTGCTTTAGCNGTATATTTCCCTGTAGGGATCCATGGAATTCCCGTGTTCCAAAATAGGCCTTNTTATGTANCNGG
AGGTGTTGCGTTTGTCTTAAACTGATATATGGCCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24190.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis