Browse Element(s) Details


OsAffx.16154.1.S1_at

Description tigr:9635.m00785
TID=OsAffx.16154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=APOBEC-1 complementation factor 43 kDa variant
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0832011/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08290Os.27415.1.S1_at11/117+4225000..4228382expressed protein
LOC_Os07g08300NANA7+4238383..4245863retrotransposon protein, putative, unclassified, expressed
LOC_Os07g08310OsAffx.22176.1.S1_at1/117+4246819..4250370major facilitator superfamily antiporter, putative
LOC_Os07g08310OsAffx.22176.1.S1_x_at1/117+4246819..4250370major facilitator superfamily antiporter, putative
LOC_Os07g08320OsAffx.16154.1.S1_at11/117+4252196..4257655RNA recognition motif family protein
LOC_Os07g08320Os.24190.1.A1_at7/117+4252196..4257655RNA recognition motif family protein
LOC_Os07g08330Os.11425.1.S1_at11/117+4261472..426401760S ribosomal protein L4, putative, expressed
LOC_Os07g08340Os.9225.1.S1_at11/117+4265180..4269784Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os07g08350Os.56324.1.S1_at11/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g08350Os.5608.3.S1_x_at1/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16154.1.S1_at--633--7631Chr07:4254747..4254771 (25 bp)
GGGACTTTGCCTTTATTAATTACAT
LOC_Os07g08320
OsAffx.16154.1.S1_at--639--9871Chr07:4254727..4254751 (25 bp)
TACATTACTCGTGAGGCTGCAATCT
LOC_Os07g08320
OsAffx.16154.1.S1_at--961--10531Chr07:4254561..4254585 (25 bp)
TTCATTGGCTAAACCTGCCCAACAG
LOC_Os07g08320
OsAffx.16154.1.S1_at--410--6471Chr07:4253471..4253495 (25 bp)
GATACCCTGTTCAAGATTATACCCA
LOC_Os07g08320
OsAffx.16154.1.S1_at--30--10231Chr07:4253442..4253466 (25 bp)
TATTCTGGAGAGAAGCGTCCCTTTT
LOC_Os07g08320
OsAffx.16154.1.S1_at--1144--1491Chr07:4253434..4253453 (20 bp)
AGCGTCCCTTTTCAACACTGAATAG
LOC_Os07g08320
OsAffx.16154.1.S1_at--136--6091Chr07:4253209..4253233 (25 bp)
GAGTAGCGGATTCTTTCTCACTTAA
LOC_Os07g08320
OsAffx.16154.1.S1_at--477--171Chr07:4253182..4253206 (25 bp)
ATTTTGCATCCTCTTATGTCAGCTA
LOC_Os07g08320
OsAffx.16154.1.S1_at--899--3051Chr07:4253131..4253155 (25 bp)
AATCTTCTCTGCCACATTATCATGA
LOC_Os07g08320
OsAffx.16154.1.S1_at--194--571Chr07:4252799..4253119 (25 bp)
ATCCTCCACACCTAGGTGAGGCAAT
LOC_Os07g08320
OsAffx.16154.1.S1_at--487--8811Chr07:4252227..4252251 (25 bp)
TGTTGAACGATCCTAGCAGTACCTT
LOC_Os07g08320
Target Sequence 
GGGACTTTGCCTTTATTAATTACATTACTCGTGAGGCTGCAATCTCGTGTCTTGAATCTTTTGACAAGGAAGAGTTCAGT
AAGAACGGCTCAAAGGTGAATATTAAAGTTTCATTGGCTAAACCTGCCCAACAGAGCAAGCAGACCAAGGAAGACCATAA
ATCTAGTATTACTGGGGAAGGCAAAATGAAGACTTCTAAAATAAGATACCCTGTTCAAGATTATACCCACATTTATTCTG
GAGAGAAGCGTCCCTTTTCAACACTGAATAGAGTAGCGGATTCTTTCTCACTTAATCATTTTGCATCCTCTTATGTCAGC
TATGGTGCGCTGCCCCCTGCTACTGCTGAATCTTCTCTGCCACATTATCATGACAGCAATAGATATCCTCCACACCTAGG
TGAGGCAATCAAGTTCTCGCCAACCAGCGCAGTCCTATCGAAGCAGGCATGGCAAAAAATGAAACTGGAAAGTGCTTCTG
AAAATTATCCTCGTATATCTGCCTGTTGTGATGTTTTCTTGGTATTCCTGAATTGTGAAGAACTGTTGAACGATCCTAGC
AGTACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis