Browse Element(s) Details


Os.9225.1.S1_at

Description gb:AK066918.1
DB_XREF= gi:32976936
TID=Os.9225.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.9225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055B17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089N03, full insert sequence.
FL= gb:AK060932.1 gb:AK070512.1 gb:AK066918.1 gb:AK062119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0834011/11Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08300NANA7+4238383..4245863retrotransposon protein, putative, unclassified, expressed
LOC_Os07g08310OsAffx.22176.1.S1_at1/117+4246819..4250370major facilitator superfamily antiporter, putative
LOC_Os07g08310OsAffx.22176.1.S1_x_at1/117+4246819..4250370major facilitator superfamily antiporter, putative
LOC_Os07g08320OsAffx.16154.1.S1_at11/117+4252196..4257655RNA recognition motif family protein
LOC_Os07g08320Os.24190.1.A1_at7/117+4252196..4257655RNA recognition motif family protein
LOC_Os07g08330Os.11425.1.S1_at11/117+4261472..426401760S ribosomal protein L4, putative, expressed
LOC_Os07g08340Os.9225.1.S1_at11/117+4265180..4269784Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os07g08350Os.56324.1.S1_at11/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g08350Os.5608.3.S1_x_at1/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g08360OsAffx.28342.1.S1_at11/117+4286616..4287418expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9225.1.S1_at--644--10031Chr07:4269196..4269220 (25 bp)
TAGATGCCGTTTTCGTCTACACAAA
LOC_Os07g08340
Os.9225.1.S1_at--706--7151Chr07:4269210..4269234 (25 bp)
GTCTACACAAACACTGGCCACATGG
LOC_Os07g08340
Os.9225.1.S1_at--981--4451Chr07:4269340..4269364 (25 bp)
GCCTCAGCTTCTCGGACGACATGGA
LOC_Os07g08340
Os.9225.1.S1_at--909--4991Chr07:4269406..4269430 (25 bp)
GCATGATCCAGTCCGGCGACCTTGT
LOC_Os07g08340
Os.9225.1.S1_at--275--5031Chr07:4269452..4269476 (25 bp)
GCAGTCCATCCAGGTCATGAACGTA
LOC_Os07g08340
Os.9225.1.S1_at--1088--9971Chr07:4269475..4269499 (25 bp)
TACCTTGAGAATCATCATGCTCCCC
LOC_Os07g08340
Os.9225.1.S1_at--780--7431Chr07:4269504..4269528 (25 bp)
GTGTTTGTTTGTTCTGCCCAAAACG
LOC_Os07g08340
Os.9225.1.S1_at--658--9151Chr07:4269518..4269542 (25 bp)
TGCCCAAAACGGAACACGGCTTTAG
LOC_Os07g08340
Os.9225.1.S1_at--1035--2171Chr07:4269531..4269555 (25 bp)
ACACGGCTTTAGTTGACATCATCTT
LOC_Os07g08340
Os.9225.1.S1_at--375--5671Chr07:4269545..4269569 (25 bp)
GACATCATCTTAAGGGCGGTTTTCT
LOC_Os07g08340
Os.9225.1.S1_at--439--2051Chr07:4269645..4269669 (25 bp)
ACTTCCAGCGCGTTGTAAACTCTAT
LOC_Os07g08340
Target Sequence 
TAGATGCCGTTTTCGTCTACACAAACACTGGCCACATGGCCTCACTGCTCTCGCGGTGCCGTCCTGACTGCCCGATCTTC
GCCTTCACGACCTCGACATCTGTGAGGAGACGATTGAACCTCCAATGGGGCCTCATCCCCTTCCGCCTCAGCTTCTCGGA
CGACATGGAGAGCAACCTGAACCGTACCTTCTCGCTGCTCAAGGCCAGGGGCATGATCCAGTCCGGCGACCTTGTCATCG
CGCTCTCCGACATGCTGCAGTCCATCCAGGTCATGAACGTACCTTGAGAATCATCATGCTCCCCTCTCGTGTTTGTTTGT
TCTGCCCAAAACGGAACACGGCTTTAGTTGACATCATCTTAAGGGCGGTTTTCTGGTTTGAAATTTATTCGTTTGTTCTC
CATTGTGTTAGACGACAGAACCAGAGAATGTTACAACAATAATGCTGCAACTTCCAGCGCGTTGTAAACTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis