Browse Element(s) Details


Os.56324.1.S1_at

Description gb:AK109854.1
DB_XREF= gi:32995063
TID=Os.56324.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F12, full insert sequence.
FL= gb:AK109854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0835011/11C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08320OsAffx.16154.1.S1_at11/117+4252196..4257655RNA recognition motif family protein
LOC_Os07g08320Os.24190.1.A1_at7/117+4252196..4257655RNA recognition motif family protein
LOC_Os07g08330Os.11425.1.S1_at11/117+4261472..426401760S ribosomal protein L4, putative, expressed
LOC_Os07g08340Os.9225.1.S1_at11/117+4265180..4269784Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os07g08350Os.56324.1.S1_at11/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g08350Os.5608.3.S1_x_at1/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g08360OsAffx.28342.1.S1_at11/117+4286616..4287418expressed protein
LOC_Os07g08370NANA7+4297292..4297936hypothetical protein
LOC_Os07g08380OsAffx.16155.1.S1_at11/117+4303154..4303414expressed protein
LOC_Os07g08390Os.53396.1.S1_at11/117+4303920..4305813uncharacterized plant-specific domain TIGR01615 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56324.1.S1_at--1102--1371Chr07:4285347..4285371 (25 bp)
AGACCACCATGGAGGTGCACTACAA
LOC_Os07g08350
Os.56324.1.S1_at--996--831Chr07:4285355..4285379 (25 bp)
ATGGAGGTGCACTACAAGATGGATG
LOC_Os07g08350
Os.56324.1.S1_at--501--1311Chr07:4285371..4285395 (25 bp)
AGATGGATGGCAATGGCGACATCGA
LOC_Os07g08350
Os.56324.1.S1_at--514--511Chr07:4285391..4285415 (25 bp)
ATCGAGGGCGGTGCTCCTGCCATGA
LOC_Os07g08350
Os.56324.1.S1_at--1024--9191Chr07:4285408..4285432 (25 bp)
TGCCATGACGCCATCGCCATGCATG
LOC_Os07g08350
Os.56324.1.S1_at--903--531Chr07:4285420..4285444 (25 bp)
ATCGCCATGCATGCCGATGGCGACG
LOC_Os07g08350
Os.56324.1.S1_at--928--4591Chr07:4285439..4285463 (25 bp)
GCGACGGCAGCTTAGAGGATTTCTT
LOC_Os07g08350
Os.56324.1.S1_at--299--1911Chr07:4285442..4285466 (25 bp)
ACGGCAGCTTAGAGGATTTCTTTTC
LOC_Os07g08350
Os.56324.1.S1_at--1029--10551Chr07:4285469..4285493 (25 bp)
TTCTTTTTGACCTGCCAAGCCAACG
LOC_Os07g08350
Os.56324.1.S1_at--389--10351Chr07:4285472..4285496 (25 bp)
TTTTTGACCTGCCAAGCCAACGCGT
LOC_Os07g08350
Os.56324.1.S1_at--1071--631Chr07:4285507..4285531 (25 bp)
ATGCATGGTTTTAGCGGTTTGAATT
LOC_Os07g08350
Target Sequence 
AGACCACCATGGAGGTGCACTACAAGATGGATGGCAATGGCGACATCGAGGGCGGTGCTCCTGCCATGACGCCATCGCCA
TGCATGCCGATGGCGACGGCAGCTTAGAGGATTTCTTTTCTTTTCTTTTTGACCTGCCAAGCCAACGCGTCCACATGCAC
ATGCATGGTTTTAGCGGTTTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis