Browse Element(s) Details


OsAffx.16155.1.S1_at

Description tigr:9635.m00792
TID=OsAffx.16155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0838011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08350Os.56324.1.S1_at11/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g08350Os.5608.3.S1_x_at1/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g08360OsAffx.28342.1.S1_at11/117+4286616..4287418expressed protein
LOC_Os07g08370NANA7+4297292..4297936hypothetical protein
LOC_Os07g08380OsAffx.16155.1.S1_at11/117+4303154..4303414expressed protein
LOC_Os07g08390Os.53396.1.S1_at11/117+4303920..4305813uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os07g08400Os.46949.1.A1_at6/117+4311094..4317484guanylate-binding family protein, putative, expressed
LOC_Os07g08410Os.7076.1.S1_at3/117+4317380..4318468expressed protein
LOC_Os07g08420Os.1501.1.S1_at11/117+4320535..4324972bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16155.1.S1_at--937--2151Chr07:4303240..4303264 (25 bp)
ACAGCGATGCAGCCGCAACCGGCGA
LOC_Os07g08380
OsAffx.16155.1.S1_at--701--1811Chr07:4303273..4303297 (25 bp)
ACGCCAATGCAAGGCGGTAGGTGCT
LOC_Os07g08380
OsAffx.16155.1.S1_at--583--3011Chr07:4303278..4303302 (25 bp)
AATGCAAGGCGGTAGGTGCTGCATC
LOC_Os07g08380
OsAffx.16155.1.S1_at--944--4751Chr07:4303295..4303319 (25 bp)
GCTGCATCGACGAGAAGTGGTGCTA
LOC_Os07g08380
OsAffx.16155.1.S1_at--692--3531Chr07:4303299..4303323 (25 bp)
CATCGACGAGAAGTGGTGCTATTCC
LOC_Os07g08380
OsAffx.16155.1.S1_at--283--4091Chr07:4303302..4303326 (25 bp)
CGACGAGAAGTGGTGCTATTCCATC
LOC_Os07g08380
OsAffx.16155.1.S1_at--971--5951Chr07:4303306..4303330 (25 bp)
GAGAAGTGGTGCTATTCCATCGGCT
LOC_Os07g08380
OsAffx.16155.1.S1_at--205--1471Chr07:4303307..4303331 (25 bp)
AGAAGTGGTGCTATTCCATCGGCTC
LOC_Os07g08380
OsAffx.16155.1.S1_at--602--2871Chr07:4303309..4303333 (25 bp)
AAGTGGTGCTATTCCATCGGCTCCT
LOC_Os07g08380
OsAffx.16155.1.S1_at--1097--7491Chr07:4303311..4303335 (25 bp)
GTGGTGCTATTCCATCGGCTCCTTG
LOC_Os07g08380
OsAffx.16155.1.S1_at--1055--4511Chr07:4303341..4303365 (25 bp)
GCCGCCAGAGCCAGTGCCCGAGGCA
LOC_Os07g08380
Target Sequence 
ACAGCGATGCAGCCGCAACCGGCGAGGACGGCGACGCCAATGCAAGGCGGTAGGTGCTGCATCGACGAGAAGTGGTGCTA
TTCCATCGGCTCCTTGCCGTGGCCGCCAGAGCCAGTGCCCGAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis