Browse Element(s) Details


Os.1501.1.S1_at

Description gb:AB053472.1
DB_XREF= gi:13365769
GEN=RISBZ1
TID=Os.1501.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1501 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for RISBZ1, complete cds.
PROD=RISBZ1
FL= gb:AB053472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0842011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08370NANA7+4297292..4297936hypothetical protein
LOC_Os07g08380OsAffx.16155.1.S1_at11/117+4303154..4303414expressed protein
LOC_Os07g08390Os.53396.1.S1_at11/117+4303920..4305813uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os07g08400Os.46949.1.A1_at6/117+4311094..4317484guanylate-binding family protein, putative, expressed
LOC_Os07g08410Os.7076.1.S1_at3/117+4317380..4318468expressed protein
LOC_Os07g08420Os.1501.1.S1_at11/117+4320535..4324972bZIP transcription factor family protein, expressed
LOC_Os07g08430Os.32503.1.S1_x_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.32503.1.S1_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430OsAffx.10400.1.S1_x_at6/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.18743.2.S1_x_at2/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08440Os.8344.1.S1_at11/117+4336814..4340518Lipoamide dehydrogenase, putative, expressed
LOC_Os07g08450OsAffx.28344.1.S1_at11/117+4347336..4352164expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1501.1.S1_at--269--891Chr07:4321065..4321089 (25 bp)
AGGCCATTCCTGACATGCAATCTCC
LOC_Os07g08420
Os.1501.1.S1_at--815--8971Chr07:4320990..4321014 (25 bp)
TGAACTACTTCTCCAACGCTAACAA
LOC_Os07g08420
Os.1501.1.S1_at--781--2231Chr07:4320969..4320993 (25 bp)
ACAATGCCGGTGTTAACAGCTTCAT
LOC_Os07g08420
Os.1501.1.S1_at--1080--6751Chr07:4320958..4320982 (25 bp)
GTTAACAGCTTCATGCACCAGGTTT
LOC_Os07g08420
Os.1501.1.S1_at--112--9231Chr07:4320932..4320956 (25 bp)
TCCAGCGTTCCAGATTGTGGATTCT
LOC_Os07g08420
Os.1501.1.S1_at--486--2811Chr07:4320901..4320925 (25 bp)
AAGATTGACCCAACAGATCCAGTGC
LOC_Os07g08420
Os.1501.1.S1_at--623--8471Chr07:4320858..4320882 (25 bp)
TGGCGAGCTTGCAGCATCTTCAGAA
LOC_Os07g08420
Os.1501.1.S1_at--902--10791Chr07:4320759..4320783 (25 bp)
TTGTCAACATGGAGCTTCAGTAGTA
LOC_Os07g08420
Os.1501.1.S1_at--78--5171Chr07:4320687..4320711 (25 bp)
GCAACCTGCAAATGCTGTTTTGTAG
LOC_Os07g08420
Os.1501.1.S1_at--806--7211Chr07:4320651..4320675 (25 bp)
GTCGCTGTTTTTGTCTGAAACTGTA
LOC_Os07g08420
Os.1501.1.S1_at--54--811Chr07:4320553..4320577 (25 bp)
ATGGGACATGGTGGTCTCCCTTAAT
LOC_Os07g08420
Target Sequence 
AGGCCATTCCTGACATGCAATCTCCCCTCAATNTCAACTNTGATGCTTCTGNGCCGATCCAGANCAACAACCCAATGAAC
TACTTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTNTCCAGCGTTCCAGATTGTGGATTCTGT
CGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAACAGATGGCGAGCTTGCAGCATCTTCAGAATNGAGCTT
GTGGTGGCNGCGCAAGTTCGAATGNATATACAGCATGGGGATCGTCTCTGATGGATGCAANTGAGCTTGTCAACATGGAG
CTTCAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAACCTGCAAATGCTGTTTTG
TAGTAGTAGTTGTNGTCGCTGTTTTTGTCTGAAACTGTAGTTTCTATGGATTTTGGACTTGCTGAGGAACATNTGCGGCT
GTTGTTGTTTCAAATTGAGAAAATGAGGGACAATGGGACATGGTGGTCTCCCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis