Browse Element(s) Details


Os.53396.1.S1_at

Description gb:AK072431.1
DB_XREF= gi:32982454
TID=Os.53396.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023093E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093E18, full insert sequence.
FL= gb:AK072431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0839011/11uncharacterized plant-specific domain TIGR01615 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08350Os.56324.1.S1_at11/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g08350Os.5608.3.S1_x_at1/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g08360OsAffx.28342.1.S1_at11/117+4286616..4287418expressed protein
LOC_Os07g08370NANA7+4297292..4297936hypothetical protein
LOC_Os07g08380OsAffx.16155.1.S1_at11/117+4303154..4303414expressed protein
LOC_Os07g08390Os.53396.1.S1_at11/117+4303920..4305813uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os07g08400Os.46949.1.A1_at6/117+4311094..4317484guanylate-binding family protein, putative, expressed
LOC_Os07g08410Os.7076.1.S1_at3/117+4317380..4318468expressed protein
LOC_Os07g08420Os.1501.1.S1_at11/117+4320535..4324972bZIP transcription factor family protein, expressed
LOC_Os07g08430Os.32503.1.S1_x_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.32503.1.S1_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430OsAffx.10400.1.S1_x_at6/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.18743.2.S1_x_at2/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53396.1.S1_at--1161--6051Chr07:4305238..4305262 (25 bp)
GAGTTCGAGCTACGCTTCGACGCCA
LOC_Os07g08390
Os.53396.1.S1_at--499--5351Chr07:4305339..4305363 (25 bp)
GAAGATTACGATGGTGGTGTCCCCA
LOC_Os07g08390
Os.53396.1.S1_at--919--1871Chr07:4305346..4305370 (25 bp)
ACGATGGTGGTGTCCCCATCGCCGT
LOC_Os07g08390
Os.53396.1.S1_at--360--4612Chr07:4305394..4305418 (25 bp)
GCGAGCAAGAAAAGGTCACCGCCGC
LOC_Os07g08390
Os.53396.1.S1_at--891--4491Chr07:4305463..4305487 (25 bp)
GCCGTGCTCTAACCGCGGCGAAGAA
LOC_Os07g08390
Os.53396.1.S1_at--1018--9791Chr07:4305472..4305496 (25 bp)
TAACCGCGGCGAAGAACTCACTTTA
LOC_Os07g08390
Os.53396.1.S1_at--924--1431Chr07:4305484..4305508 (25 bp)
AGAACTCACTTTACTACACTAGCTA
LOC_Os07g08390
Os.53396.1.S1_at--1115--9311Chr07:4305493..4305517 (25 bp)
TTTACTACACTAGCTAATTAACCAG
LOC_Os07g08390
Os.53396.1.S1_at--21--3811Chr07:4305523..4305547 (25 bp)
CTCCCTCGCCAATTTTCTCTGTTTT
LOC_Os07g08390
Os.53396.1.S1_at--165--5191Chr07:4305716..4305740 (25 bp)
GCAAGGAGCAGTAGCTGTGACAGCT
LOC_Os07g08390
Os.53396.1.S1_at--1159--6951Chr07:4305726..4305750 (25 bp)
GTAGCTGTGACAGCTTCTAGGCCCC
LOC_Os07g08390
Target Sequence 
GAGTTCGAGCTACGCTTCGACGCCAAGACCCCACCAAACCTCAGCGCCACCGCCGCCGGCGACGACAACGACAACGACNA
CGACGACGAGGTCGAGGCGAAGAAGATTACGATGGTGGTGTCCCCATCGCCGTGGCGCCCGGTGGAGCCGGAGGCGGCGA
GCAAGAAAAGGTCACCGCCGCCGCCGCCGCGGCGCCCCGAGGGGAAGGTGGTGACCGGGCTCGCCGCCGTGCTCTAACCG
CGGCGAAGAACTCACTTTACTACACTAGCTAATTAACCAGCTCTCCTCCCTCGCCAATTTTCTCTGTTTTTTTTTTCATT
TTTCCATCGCCGCTTTGATCCGTCCGAGGCTTAGCTCATGGTGTTTTCTCAGTTTTTTTTCCGATTTTTTGGAAAAAGAC
ATTTACAGAANACACCTCCNTTTTTCTTTTTTCNTTTTTTTATTCTAGAACAAATTTTGGTTTCCACAAAAGGGAAGTGC
AAGGAGCAGTAGCTGTGACAGCTTCTAGGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis