Browse Element(s) Details


OsAffx.28342.1.S1_at

Description tigr:9635.m00790
TID=OsAffx.28342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0836011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08330Os.11425.1.S1_at11/117+4261472..426401760S ribosomal protein L4, putative, expressed
LOC_Os07g08340Os.9225.1.S1_at11/117+4265180..4269784Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os07g08350Os.56324.1.S1_at11/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g08350Os.5608.3.S1_x_at1/117+4281946..4285582C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g08360OsAffx.28342.1.S1_at11/117+4286616..4287418expressed protein
LOC_Os07g08370NANA7+4297292..4297936hypothetical protein
LOC_Os07g08380OsAffx.16155.1.S1_at11/117+4303154..4303414expressed protein
LOC_Os07g08390Os.53396.1.S1_at11/117+4303920..4305813uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os07g08400Os.46949.1.A1_at6/117+4311094..4317484guanylate-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28342.1.S1_at--460--3031Chr07:4286703..4286727 (25 bp)
AATCGCATCGGGAGCGGAACGCCAT
LOC_Os07g08360
OsAffx.28342.1.S1_at--280--3551Chr07:4286708..4286732 (25 bp)
CATCGGGAGCGGAACGCCATCGCCA
LOC_Os07g08360
OsAffx.28342.1.S1_at--79--2211Chr07:4286787..4286811 (25 bp)
ACAACTGCGGTGATGTCCGCATCGT
LOC_Os07g08360
OsAffx.28342.1.S1_at--906--7231Chr07:4286801..4286825 (25 bp)
GTCCGCATCGTCAAGTGTGACCGCG
LOC_Os07g08360
OsAffx.28342.1.S1_at--1036--2631Chr07:4286860..4286884 (25 bp)
AACCACCAACTCTGCAAGGTGCTTG
LOC_Os07g08360
OsAffx.28342.1.S1_at--1014--9011Chr07:4286872..4286896 (25 bp)
TGCAAGGTGCTTGGCCCCGATCGAT
LOC_Os07g08360
OsAffx.28342.1.S1_at--689--6391Chr07:4286890..4286914 (25 bp)
GATCGATCGAGCTCTTTTTCTCGCC
LOC_Os07g08360
OsAffx.28342.1.S1_at--731--9251Chr07:4286917..4287112 (25 bp)
TCCTCTACGTCTAGGTGCTCAACGT
LOC_Os07g08360
OsAffx.28342.1.S1_at--22--1951Chr07:4287186..4287210 (25 bp)
ACGGCGAGGATAACCAGCTGATGGT
LOC_Os07g08360
OsAffx.28342.1.S1_at--913--1711Chr07:4287198..4287222 (25 bp)
ACCAGCTGATGGTGAACAGCTACCA
LOC_Os07g08360
OsAffx.28342.1.S1_at--5--9971Chr07:4287218..4287242 (25 bp)
TACCACTGCACCACCAGGGAGGGCG
LOC_Os07g08360
Target Sequence 
AATCGCATCGGGAGCGGAACGCCATCGCCAGCCGCATCCGCCGCGCCGACGCCACCGCAGCGCGTCGCCCCTACATCAAG
TGCAACAACTGCGGTGATGTCCGCATCGTCAAGTGTGACCGCGCCCTCTCGACGACTGGCTCCGCGACGACTTCCCCAAC
CACCAACTCTGCAAGGTGCTTGGCCCCGATCGATCGAGCTCTTTTTCTCGCCGCTCCTCTACGTCTAGGTGCTCAACGTC
GCCTGAGGCGGCCACCCGGGGCGCGTCCTACCGAGCACACCGCTGCACGAGTGGTTCTCGCGGAGTCGCTCGACGGCGAG
GATAACCAGCTGATGGTGAACAGCTACCACTGCACCACCAGGGAGGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis