Browse Element(s) Details


Os.24219.1.A1_at

Description gb:CA761459
DB_XREF= gi:25805498
DB_XREF=BR060010A21C07.ab1
CLONE=BR060010A21C07.ab1
TID=Os.24219.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.24219 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g137001/11Phosphoenolpyruvate carboxykinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13660OsAffx.18247.1.S1_at11/1110+7177311..7178909hypothetical protein
LOC_Os10g13670Os.8029.1.S1_at11/1110+7179868..7184734RING zinc finger protein, putative, expressed
LOC_Os10g13680OsAffx.8359.1.S1_at11/1110+7188762..7190948retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.27518.1.S1_at11/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.27518.3.S1_x_at4/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690Os.52249.1.S1_at1/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.22180.1.S1_at1/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13700Os.8805.1.S1_at11/1110+7203525..7209267Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os10g13700Os.24219.1.A1_at1/1110+7203525..7209267Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os10g13710OsAffx.30217.1.S1_x_at2/1110+7216381..7217870hypothetical protein
LOC_Os10g13710OsAffx.10222.1.S1_x_at1/1110+7216381..7217870hypothetical protein
LOC_Os10g13730NANA10+7222925..7224950Transposable element protein, putative, Retrotrans_gag
LOC_Os10g13740NANA10+7232752..7235090retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006094biological_processgluconeogenesis
GO:0004612molecular_functionphosphoenolpyruvate carboxykinase (ATP) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24219.1.A1_at--55--10071Chr02:29392211..29392234 (24 bp)
TAGTGAGAAGACTTTTCAGTACCCC
NONE
Os.24219.1.A1_at--405--311NONE
ATACTTGGAGCCTTAATAGCGTCCG
NONE
Os.24219.1.A1_at--800--3091NONE
AATAGCGTCCGTGGTGGCAATGTTC
NONE
Os.24219.1.A1_at--106--8231NONE
GGCAATGTTCGTTTCGTTCTACTTT
NONE
Os.24219.1.A1_at--74--1671NONE
AGCCCTCCGTGAATTCCAATGGAAA
NONE
Os.24219.1.A1_at--1055--7871NONE
GGTTATTGTTTGCATGTCCTTTAGA
NONE
Os.24219.1.A1_at--414--3031NONE
AATGCCACGCAAACACCGAGAGGAT
NONE
Os.24219.1.A1_at--367--6175Chr11:26397257..26397281 (25 bp)
GAGGATATCCTCTCGAGGGATCAAA
NONE
Os.24219.1.A1_at--277--9311NONE
TCCCCTCTCACCTAATAGCTATAGA
NONE
Os.24219.1.A1_at--640--5191NONE
GCAATCTCATTATTGTGCCCCATTG
NONE
Os.24219.1.A1_at--1007--9151NONE
TGCCCCATTGAAGCTATTCTACGTG
NONE
Target Sequence 
TAGTGAGAAGACTTTTCAGTACCCCCATACTTGGAGCCTTAATAGCGTCCGTGGTGGCAATGTTCGTTTCGTTCTACTTT
TGGACGGTAAGCGAGTCATTGGAAGAGTTGCATGTGGCACCATTTCCCCCTTTCATCCTACGGGGAGTAAGCAGCCCTCC
GTGAATTCCAATGGAAAATTATTTTTATTCCTCGAGAGGTTATTGTTTGCATGTCCTTTAGATAAATATAAAAAATTTGA
AAAAAAAAGAGATGATATATTACATATTAATCCCTTTTATTAAAGTTTTTCATAACTATTTAAATGCCACGCAAACACCG
AGAGGATATCCTCTCGAGGGATCAAAATTAATCCCCTCTCACCTAATAGCTATAGAATTCGCAATCTCATTATTGTGCCC
CATTGAAGCTATTCTACGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24219.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis