Browse Element(s) Details


Os.24302.1.S1_at

Description gb:AK065838.1
DB_XREF= gi:32975856
TID=Os.24302.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013039J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039J03, full insert sequence.
FL= gb:AK121495.1 gb:AK065838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0638010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06340Os.27423.1.S1_x_at11/1112+3028600..3033637Associated with HOX family protein, expressed
LOC_Os12g06350NANA12+3043007..3046097retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06360OsAffx.20387.1.S1_x_at1/1112+3046350..3048728retrotransposon protein, putative, unclassified
LOC_Os12g06370OsAffx.17106.1.S1_x_at1/1112+3049788..3052848retrotransposon protein, putative, unclassified
LOC_Os12g06390OsAffx.19520.1.S1_at11/1112+3057519..3058481hypothetical protein
LOC_Os12g06380Os.24302.1.S1_at10/1112+3058462..3062767transposon protein, putative, unclassified, expressed
LOC_Os12g06400OsAffx.14433.1.S1_at1/1112+3065906..3066184hypothetical protein
LOC_Os12g06410NANA12+3067761..3069074U-box domain containing protein, expressed
LOC_Os12g06420OsAffx.18570.1.S1_at2/1112+3079841..3081532hypothetical protein
LOC_Os12g06430OsAffx.31614.1.S1_at11/1112+3082048..3082690hypothetical protein
LOC_Os12g06430OsAffx.15641.1.S1_at1/1112+3082048..3082690hypothetical protein
LOC_Os12g06440Os.51885.1.S1_at11/1112+3086299..3090664expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24302.1.S1_at--835--2711Chr12:3061530..3061554 (25 bp)
AAGCAGTTTCATCTCAGACAGCTGA
LOC_Os12g06380
Os.24302.1.S1_at--102--5631Chr12:3061553..3061577 (25 bp)
GACACAGTTTTAGTTGATCCACCAA
LOC_Os12g06380
Os.24302.1.S1_at--259--8511Chr12:3061608..3061632 (25 bp)
TGGCAACAAACTCATCTATCGGTAG
LOC_Os12g06380
Os.24302.1.S1_at--920--3531Chr12:3061620..3061644 (25 bp)
CATCTATCGGTAGACCTTTCTTCTA
LOC_Os12g06380
Os.24302.1.S1_at--912--10211Chr12:3061796..3061820 (25 bp)
TATTCATTCTGTGCCTCAGTGTGCA
LOC_Os12g06380
Os.24302.1.S1_at--347--2111Chr12:3062401..3062425 (25 bp)
ACAGGAATATTCAGCCTATGGCGCA
LOC_Os12g06380
Os.24302.1.S1_at--666--491Chr12:3062430..3062454 (25 bp)
ATCCTCCTCCAACATTTGGTGGTGG
LOC_Os12g06380
Os.24302.1.S1_at--1030--6911Chr12:3062525..3062549 (25 bp)
GTATGTGCATGGTCTAATCGAACGA
LOC_Os12g06380
Os.24302.1.S1_at--22--3051Chr12:3062540..3062564 (25 bp)
AATCGAACGATTTTGCTAGGCAGTA
LOC_Os12g06380
Os.24302.1.S1_at--720--5331Chr12:3062587..3062611 (25 bp)
GAAGTAGGCCTCTCCTTATTGTATA
LOC_Os12g06380
Os.24302.1.S1_at--1151--3691NONE
CTAGGCTACTAGCTCTTACCTGAGA
NONE
Target Sequence 
AAGCAGTTTCATCTCAGACAGCTGACACAGTTTTAGTTGATCCACCAAATCAAAATCAATATTTTGCAACAGAAGATATG
GCAACAAACTCATCTATCGGTAGACCTTTCTTCTACCAGGGGTTTCCTTCTGCTGGTGTTTCAACAAGTCAGATTCAGGG
GCATACGAATATTCATTCTGTGCCTCAGTGTGCACCACAGGAATATTCAGCCTATGGCGCAGCTCATCCTCCTCCAACAT
TTGGTGGTGGAAGAAATTTCTGAAGAATGTAGAGCATTGATGTGTGAATAGCTGAAGTTCATATTCTTTGACATATTGTT
GTATGTGCATGGTCTAATCGAACGATTTTGCTAGGCAGTAGTCNCCTTACCTAGCAGCAATAGAAGTAGGCCTCTCCTTA
TTGTATAAATTATTGAATTTGCTAATTGTTGTACTAGTTGTAAATTTGCTATTCNCTAGTTGCATGAAGTAAAAAAATAT
TGTGCTGTAGGGAATAGATGAATTAATACTTTTTGTGCATATGTCAGGTTACTAATACTAGGCTACTAGCTCTTACCTGA
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis