Browse Element(s) Details


Os.24338.1.A1_at

Description gb:AK111667.1
DB_XREF= gi:37988330
TID=Os.24338.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155L06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155L06, full insert sequence.
FL= gb:AK111667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6802011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68000OsAffx.2431.1.S1_at11/111+39850487..39854076TERMINAL EAR1, putative, expressed
LOC_Os01g68010Os.7724.1.S1_at11/111+39865000..39867945TBC domain containing protein, expressed
LOC_Os01g68020Os.24338.1.A1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68020Os.11316.1.S1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68030Os.4675.1.S1_at5/111+39876192..39877575expressed protein
LOC_Os01g68040Os.26355.1.S1_at11/111+39878283..39882103CorA-like Mg2+ transporter protein, expressed
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24338.1.A1_at--360--3191Chr01:39872281..39872305 (25 bp)
CAATTTGCCGATTTTTTGTGCCTCA
LOC_Os01g68020
Os.24338.1.A1_at--310--10831Chr01:39872296..39872320 (25 bp)
TTGTGCCTCATCAAACTGTGCGAGT
LOC_Os01g68020
Os.24338.1.A1_at--203--4451Chr01:39872414..39872438 (25 bp)
GCCGTAAACAAATCTCGTGGAGCAG
LOC_Os01g68020
Os.24338.1.A1_at--66--10291Chr01:39872588..39872612 (25 bp)
TTTCCGCCGCTTGGTTTGGAGTTTG
LOC_Os01g68020
Os.24338.1.A1_at--548--7811Chr01:39872617..39872641 (25 bp)
GGTAGCGCCTGCCTAGTTGGAACCC
LOC_Os01g68020
Os.24338.1.A1_at--997--10731Chr01:39872647..39872671 (25 bp)
TTGCAGGCGAGCACCAAGCAGGCAG
LOC_Os01g68020
Os.24338.1.A1_at--595--9511Chr01:39872676..39872700 (25 bp)
TCTCGTCGGCGCCACAAGAAAAATC
LOC_Os01g68020
Os.24338.1.A1_at--978--3371Chr01:39872748..39872772 (25 bp)
CAGCCATCATCTCGTGTTGGTTTTT
LOC_Os01g68020
Os.24338.1.A1_at--537--2751Chr01:39872786..39872810 (25 bp)
AAGAACTCTCTTTTTGTGTGTGGAG
LOC_Os01g68020
Os.24338.1.A1_at--19--1331Chr01:39872815..39872839 (25 bp)
AGAGGTAGGGACCTGCCCAAACTGT
LOC_Os01g68020
Os.24338.1.A1_at--784--3451Chr01:39872842..39872866 (25 bp)
CAGTGTCCCGATCCGTTTGAAACGA
LOC_Os01g68020
Target Sequence 
CAATTTGCCGATTTTTTGTGCCTCATCAAACTGTGCGAGTCTTGACAAGGCAGGTCAGGTAAGGTGACACAACNCAACCC
CNCACAAATGACACAAACAGAGCATCGAAACATCGCCATCTCCAGCTCCGAGAGCCGTAAACAAATCTCGTGGAGCAGAA
TCCATGCCTTGCCTCGGCGCGTCGACTTGGACGGNACAGACAGAGNAAAAAAAANANAGAAAAAGTAGTAGTAAAGCGAA
GCAACGATAAGTACTAGACCACTAGAGCAGTAGGAGAAGTCGAGAAGAGGATGATTTTGGCTTTCTTTTTCCGCCGCTTG
GTTTGGAGTTTGGTGTGGTAGCGCCTGCCTAGTTGGAACCCTCCCCTTGCAGGCGAGCACCAAGCAGGCAGCCGATCTCG
TCGGCGCCACAAGAAAAATCGTTGCTGTCGCTGGTGCGGCTTGCNGGGCCGGGACCGCTCGCCGCCTCAGCCATCATCTC
GTGTTGGTTTTTGTTGAAAAAAAAAAGAACTCTCTTTTTGTGTGTGGAGATGCAGAGGTAGGGACCTGCCCAAACTGTCC
CAGTGTCCCGATCCGTTTGAAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24338.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis