Browse Element(s) Details


Os.24403.1.A1_at

Description gb:AK071764.1
DB_XREF= gi:32981787
TID=Os.24403.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110L01, full insert sequence.
FL= gb:AK071764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1766011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17610Os.53537.1.S1_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610OsAffx.12900.1.S1_x_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17610Os.52906.1.S1_at11/113+9773392..9778171DNA topoisomerase VIA, putative, expressed
LOC_Os03g17634Os.52224.1.S1_at11/113+9778147..9801118pentatricopeptide, putative, expressed
LOC_Os03g17660OsAffx.3261.1.S1_at11/113+9801893..9806030expressed protein
LOC_Os03g17660Os.24403.1.A1_at11/113+9801893..9806030expressed protein
LOC_Os03g17670NANA3+9807199..9807949hypothetical protein
LOC_Os03g17680OsAffx.3262.1.S1_s_at11/113+9811825..9812028expressed protein
LOC_Os03g17690Os.12723.1.S1_at9/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17690OsAffx.18972.1.S1_at1/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17700Os.406.1.S1_a_at11/113+9826769..9829502Mitogen-activated protein kinase homolog 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24403.1.A1_at--807--1451Chr03:9805188..9805212 (25 bp)
AGCACGTTTTTCATTACAGCCAATT
LOC_Os03g17660
Os.24403.1.A1_at--528--1691Chr03:9805225..9805249 (25 bp)
AGCCAGTTCATTAGCTTCGTATAAT
LOC_Os03g17660
Os.24403.1.A1_at--720--1731Chr03:9805302..9805326 (25 bp)
ACCTTCCCGTCCACTGAATAATTAG
LOC_Os03g17660
Os.24403.1.A1_at--952--8591Chr03:9805415..9805439 (25 bp)
TGGTCAGGGCATCACATGTAATCTT
LOC_Os03g17660
Os.24403.1.A1_at--355--5371Chr03:9805440..9805464 (25 bp)
GAAGACTTGGTCGTGACATCTTTAT
LOC_Os03g17660
Os.24403.1.A1_at--649--5671Chr03:9805454..9805478 (25 bp)
GACATCTTTATATTCAGCATCCGGG
LOC_Os03g17660
Os.24403.1.A1_at--455--551Chr03:9805484..9805508 (25 bp)
ATCCGACGATGGATTTGTCATCTTT
LOC_Os03g17660
Os.24403.1.A1_at--762--271Chr03:9805567..9805591 (25 bp)
ATAGGTTGTGGCACTGTTTGTCCAG
LOC_Os03g17660
Os.24403.1.A1_at--32--8331Chr03:9805609..9805633 (25 bp)
GGCTCTGGATGGATTTTGTGTTGTC
LOC_Os03g17660
Os.24403.1.A1_at--539--7411Chr03:9805626..9805650 (25 bp)
GTGTTGTCTGTACTGAACCTTCGGA
LOC_Os03g17660
Os.24403.1.A1_at--1010--151Chr03:9805655..9805679 (25 bp)
ATTTTGTCCAGCGAATTCATTGTTT
LOC_Os03g17660
Target Sequence 
AGCACGTTTTTCATTACAGCCAATTTGAAGTCAAAAAAGCCAGTTCATTAGCTTCGTATAATAGTAATGCCTAGATAAAC
AGGAATCTTGCTTAGATGTAAAGCTATTTAATTAACCTTCCCGTCCACTGAATAATTAGCGTCTGTCGCTTATATTGNAG
GCATAGAAAANAGTCTGTCAATATCTTATAGTTAAACGATTCGATGGAATGCGAATCTGNATAAACATGGTCAGGGCATC
ACATGTAATCTTGAAGACTTGGTCGTGACATCTTTATATTCAGCATCCGGGATTAAATCCGACGATGGATTTGTCATCTT
TGTGTATAATAAAAAGGATTTTTTTTTCTTTTTTTATAATTGAACAATGCCCAAGTTTTATAGGTTGTGGCACTGTTTGT
CCAGTGAATTCATTGTTCAGGGGCTCTGGATGGATTTTGTGTTGTCTGTACTGAACCTTCGGAGAATATTTTGTCCAGCG
AATTCATTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24403.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis