Browse Element(s) Details


Os.2448.1.S2_at

Description gb:AK100650.1
DB_XREF= gi:32985859
TID=Os.2448.1
CNT=112
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.2448 (NCBI UniGene Cluster)
UG_TITLE=Small GTP-binding protein RACBP (RACB) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111D06, full insert sequence.
FL= gb:AK064827.1 gb:AF250327.2 gb:AK100842.1 gb:AK100585.1 gb:AK061649.1 gb:AK100650.1 gb:AK119517.1 gb:AK061743.1 gb:AK069443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4498011/11Amino acid transport protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44930Os.7523.1.S1_at11/112+27219411..27221344HMG1/2, putative, expressed
LOC_Os02g44940OsAffx.24733.1.S1_s_at11/112+27222966..27223758Rapid ALkalinization Factor family protein, expressed
LOC_Os02g44950NANA2+27226755..27227288transposon protein, putative, unclassified
LOC_Os02g44960Os.43567.1.S1_x_at1/112+27228929..27229624retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44970NANA2+27232788..27234851hypothetical protein
LOC_Os02g44980Os.2448.1.S2_at11/112+27238974..27241065Amino acid transport protein, putative, expressed
LOC_Os02g44980Os.20175.1.A1_x_at1/112+27238974..27241065Amino acid transport protein, putative, expressed
LOC_Os02g44990Os.26517.1.S1_at11/112+27242828..27245601F-box domain containing protein, expressed
LOC_Os02g44990Os.26517.1.S2_at11/112+27242828..27245601F-box domain containing protein, expressed
LOC_Os02g45000Os.6760.1.A1_at11/112+27256101..27257629expressed protein
LOC_Os02g45010Os.54904.1.S1_at11/112+27260333..27263338expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015171molecular_functionamino acid transporter activity
GO:0015173molecular_functionaromatic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2448.1.S2_at--514--5251Chr02:27240477..27240501 (25 bp)
GAATCTTTACGGATAGCTGCGCCGA
LOC_Os02g44980
Os.2448.1.S2_at--1059--4771Chr02:27240492..27240516 (25 bp)
GCTGCGCCGATGATTGATTTGCTCA
LOC_Os02g44980
Os.2448.1.S2_at--801--191Chr02:27240508..27240532 (25 bp)
ATTTGCTCATTTGCTTCGCGCGCGG
LOC_Os02g44980
Os.2448.1.S2_at--77--1691Chr02:27240538..27240562 (25 bp)
AGCCTGTCAGGTACGCTGGTTGCAT
LOC_Os02g44980
Os.2448.1.S2_at--872--4711Chr02:27240552..27240576 (25 bp)
GCTGGTTGCATTCTTCGTGTACAGA
LOC_Os02g44980
Os.2448.1.S2_at--408--7611Chr02:27240599..27240623 (25 bp)
GGGCAATGCCCAATTCAGCTTGCTG
LOC_Os02g44980
Os.2448.1.S2_at--419--10511Chr02:27240612..27240636 (25 bp)
TTCAGCTTGCTGTTGATTTGGGCAT
LOC_Os02g44980
Os.2448.1.S2_at--1152--831Chr02:27240635..27240659 (25 bp)
ATGGACAGCGTGCATCGGCCGCATT
LOC_Os02g44980
Os.2448.1.S2_at--954--8411Chr02:27240651..27240675 (25 bp)
GGCCGCATTCTTTCGATTACAAGTC
LOC_Os02g44980
Os.2448.1.S2_at--782--1251Chr02:27240736..27240760 (25 bp)
AGATTCCCATAGCTACTCGTGTCAG
LOC_Os02g44980
Os.2448.1.S2_at--120--771Chr02:27240776..27240800 (25 bp)
ATGTCTTGGATGTTTCAGCTGCTGC
LOC_Os02g44980
Target Sequence 
GAATCTTTACGGATAGCTGCGCCGATGATTGATTTGCTCATTTGCTTCGCGCGCGGGTGTCAGCCTGTCAGGTACGCTGG
TTGCATTCTTCGTGTACAGAGAAGGTGATCGGTCGATCAGAGGGGCAATGCCCAATTCAGCTTGCTGTTGATTTGGGCAT
GGACAGCGTGCATCGGCCGCATTCTTTCGATTACAAGTCAGATGGTTTGTACAAGTTAGCGTGGATGGCATGGAGAAATC
TGTATGGTTTTGCAACGACAGATTCCCATAGCTACTCGTGTCAGTTAATATTTATGTGTATGTCTTGGATGTTTCAGCTG
CTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2448.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis