Browse Element(s) Details


Os.2450.3.S1_x_at

Description gb:AK106451.1
DB_XREF= gi:32991660
TID=Os.2450.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2450 (NCBI UniGene Cluster)
UG_TITLE=Phosphoenolpyruvate carboxylase mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F01, full insert sequence.
FL= gb:AK106451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1477011/11Phosphoenolpyruvate carboxylase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14740NANA2+8151391..8151966hypothetical protein
LOC_Os02g14750NANA2+8157598..8158715hypothetical protein
LOC_Os02g14760Os.5802.1.S1_at11/112+8164660..8169144RNA-binding protein, putative, expressed
LOC_Os02g14770Os.2450.3.S1_x_at11/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770Os.2450.1.S1_a_at10/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.29538.2.S1_s_at8/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.18275.1.A1_at1/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14780Os.7264.1.S1_at11/112+8197004..8199780Surp module family protein, expressed
LOC_Os02g14790Os.49813.1.S1_a_at11/112+8204989..8206392Peroxisomal targeting signal 2 receptor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2450.3.S1_x_at--61--4571Chr02:8182306..8182330 (25 bp)
GCGCCGCATTGATACTGCTCTGAAA
LOC_Os02g14770
Os.2450.3.S1_x_at--585--7931Chr02:8182274..8182298 (25 bp)
GGATTAATGAGCGTCTTCCTTACAA
LOC_Os02g14770
Os.2450.3.S1_x_at--1013--5271Chr02:8181829..8181853 (25 bp)
GAATGATGGCTGCTAACCTGTACTT
LOC_Os02g14770
Os.2450.3.S1_x_at--971--4831Chr02:8181818..8181842 (25 bp)
GCTAACCTGTACTTCTCTCAGATAG
LOC_Os02g14770
Os.2450.3.S1_x_at--840--8391Chr02:8181678..8181702 (25 bp)
GGCGCTGCAGTGATGAACTTCGAAT
LOC_Os02g14770
Os.2450.3.S1_x_at--124--10731Chr02:8181640..8181664 (25 bp)
TTGCATTGCTCCTCCAGAAAAGCTG
LOC_Os02g14770
Os.2450.3.S1_x_at--899--5851Chr02:8180803..8180827 (25 bp)
GAGCCTTATCGTGTCATACTTGGTG
LOC_Os02g14770
Os.2450.3.S1_x_at--886--5451Chr02:8180749..8180773 (25 bp)
GAACGTACTCGCCATCTATTGACAA
LOC_Os02g14770
Os.2450.3.S1_x_at--101--3171Chr02:8180711..8180735 (25 bp)
AATTCCAGAGGAGGCAACGTTTACT
LOC_Os02g14770
Os.2450.3.S1_x_at--531--5351Chr02:8180597..8180617 (21 bp)
GAAGAGTTTCTGGAGCCGCTTGAGC
LOC_Os02g14770
Os.2450.3.S1_x_at--244--5871Chr02:8180585..8180609 (25 bp)
GAGCCGCTTGAGCTGTGCTACAGAT
LOC_Os02g14770
Target Sequence 
GCGCCGCATTGATACTGCTCTGAAAAATATTGGGATTAATGAGCGTCTTCCTTACAATGCTCCTCTCATCCAGTTCTCAT
CCTGGATGGGTGGTGACCGTGATGGAAACCCAAGAGTTACACCAGAGGTTACAAGAGATGTATGCTTGTTGGCAAGAATG
ATGGCTGCTAACCTGTACTTCTCTCAGATAGAAGATCTGATGTTTGAGCTCTCTATGTGGCGCTGCAGTGATGAACTTCG
AATTCTGCAGATGATTTGCATTGCTCCTCCAGAAAAGCTGCAAAGCACTATATAGAATTCTGGAAGCAAATTCCTCCAAA
TGAGCCTTATCGTGTCATACTTGGTGGTGTCAGGGATAAATTGTACTATACGCGTGAACGTACTCGCCATCTATTGACAA
CTGGAGTTTCTGAAATTCCAGAGGAGGCAACGTTTACTAATGTTGAAGAGTTTCTGGAGCCGCTTGAGCTGTGCTACAGA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2450.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis