Browse Element(s) Details


Os.24545.2.S1_at

Description gb:AK073878.1
DB_XREF= gi:32983901
TID=Os.24545.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072G18, full insert sequence.
FL= gb:AK073878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3030010/116-phosphogluconolactonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30260Os.50763.1.S1_at11/113+17217308..17221476COBRA-like protein 2 precursor, putative, expressed
LOC_Os03g30264NANA3+17226272..17226922hypothetical protein
LOC_Os03g30270OsAffx.8319.1.S1_x_at2/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30270Os.12826.1.S1_at1/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30280OsAffx.13121.1.S1_at11/113+17233535..17234151hypothetical protein
LOC_Os03g30290NANA3+17239325..17242217expressed protein
LOC_Os03g30300Os.24545.2.S1_x_at11/113+17242973..172477726-phosphogluconolactonase family protein, expressed
LOC_Os03g30300Os.24545.2.S1_at10/113+17242973..172477726-phosphogluconolactonase family protein, expressed
LOC_Os03g30320OsAffx.13124.1.S1_at5/113+17251733..17254400hypothetical protein
LOC_Os03g30320OsAffx.31757.1.S1_at1/113+17251733..17254400hypothetical protein
LOC_Os03g30334OsAffx.20513.1.S1_at2/113+17259246..17260856hypothetical protein
LOC_Os03g30350NANA3+17263989..17267383retrotransposon protein, putative, unclassified
LOC_Os03g30360NANA3+17267633..17271770retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24545.2.S1_at--592--4511Chr03:17243004..17243028 (25 bp)
GCCGAATATGTTAGCGATGCTTGGT
LOC_Os03g30300
Os.24545.2.S1_at--168--10131Chr03:17242998..17243022 (25 bp)
TATGTTAGCGATGCTTGGTGTGCAC
LOC_Os03g30300
Os.24545.2.S1_at--396--8791Chr03:17242996..17243020 (25 bp)
TGTTAGCGATGCTTGGTGTGCACTC
LOC_Os03g30300
Os.24545.2.S1_at--419--10451Chr03:17242994..17243018 (25 bp)
TTAGCGATGCTTGGTGTGCACTCTA
LOC_Os03g30300
Os.24545.2.S1_at--1055--9991Chr03:17242993..17243017 (25 bp)
TAGCGATGCTTGGTGTGCACTCTAT
LOC_Os03g30300
Os.24545.2.S1_at--956--4611Chr03:17242991..17243015 (25 bp)
GCGATGCTTGGTGTGCACTCTATTA
LOC_Os03g30300
Os.24545.2.S1_at--890--6331Chr03:17242989..17243013 (25 bp)
GATGCTTGGTGTGCACTCTATTATA
LOC_Os03g30300
Os.24545.2.S1_at--956--4931Chr03:17242986..17243010 (25 bp)
GCTTGGTGTGCACTCTATTATATGT
LOC_Os03g30300
Os.24545.2.S1_at--1114--8611Chr03:17242983..17243007 (25 bp)
TGGTGTGCACTCTATTATATGTGAG
LOC_Os03g30300
Os.24545.2.S1_at--126--7471Chr03:17242981..17243005 (25 bp)
GTGTGCACTCTATTATATGTGAGTT
LOC_Os03g30300
Os.24545.2.S1_at--256--3691Chr03:17242972..17242996 (25 bp)
CTATTATATGTGAGTTTAAGTTGCA
NONE
Target Sequence 
GCCGAATATGTTAGCGATGCTTGGTGTGCACTCTATTATATGTGAGTTTAAGTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24545.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis