Browse Element(s) Details


Os.50763.1.S1_at

Description gb:AK058400.1
DB_XREF= gi:32968418
TID=Os.50763.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B05, full insert sequence.
FL= gb:AK103650.1 gb:AK058400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3026011/11COBRA-like protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30200Os.7354.1.S1_at11/113+17191511..17196010Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g30210OsAffx.25377.3.S1_at11/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.3.S1_x_at11/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.45721.1.S1_s_at8/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.1.S1_at3/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.24942.3.S1_s_at2/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.1.S1_x_at2/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.24942.4.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.2.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.45721.1.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30220OsAffx.25293.1.S1_at11/113+17203247..17204497Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30230OsAffx.3370.1.S1_at11/113+17208468..17209031Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30240OsAffx.25294.1.S1_at11/113+17213591..17214049hypothetical protein
LOC_Os03g30250Os.37902.1.S1_at11/113+17215334..17217366Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os03g30260Os.50763.1.S1_at11/113+17217308..17221476COBRA-like protein 2 precursor, putative, expressed
LOC_Os03g30264NANA3+17226272..17226922hypothetical protein
LOC_Os03g30270OsAffx.8319.1.S1_x_at2/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30270Os.12826.1.S1_at1/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30280OsAffx.13121.1.S1_at11/113+17233535..17234151hypothetical protein
LOC_Os03g30290NANA3+17239325..17242217expressed protein
LOC_Os03g30300Os.24545.2.S1_x_at11/113+17242973..172477726-phosphogluconolactonase family protein, expressed
LOC_Os03g30300Os.24545.2.S1_at10/113+17242973..172477726-phosphogluconolactonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009825biological_processmultidimensional cell growth
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0010215biological_processcellulose microfibril organization
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009897cellular_componentexternal side of plasma membrane
GO:0009930cellular_componentlongitudinal side of cell surface (sensu Magnoliophyta)
GO:0031225cellular_componentanchored to membrane
GO:0046658cellular_componentanchored to plasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50763.1.S1_at--163--5591Chr03:17217858..17217882 (25 bp)
GAAATGTCCAATCCGAGCTTCTATT
LOC_Os03g30260
Os.50763.1.S1_at--286--1051Chr03:17217801..17217825 (25 bp)
AGGGTTGGGCTTTTCCAAGGCGCAT
LOC_Os03g30260
Os.50763.1.S1_at--334--2951Chr03:17217785..17217809 (25 bp)
AAGGCGCATATACTTCAATGGCGAA
LOC_Os03g30260
Os.50763.1.S1_at--268--5571Chr03:17217763..17217787 (25 bp)
GAAAGTTGTGTCATGCCTTCACCAG
LOC_Os03g30260
Os.50763.1.S1_at--1005--10511Chr03:17217746..17217770 (25 bp)
TTCACCAGATCTGTACCCATGGTTA
LOC_Os03g30260
Os.50763.1.S1_at--185--10451Chr03:17217699..17217723 (25 bp)
TTAGGACTGTATTCCTTCTCATGTC
LOC_Os03g30260
Os.50763.1.S1_at--983--10571Chr03:17217684..17217708 (25 bp)
TTCTCATGTCATTCCTGGTTTGTGG
LOC_Os03g30260
Os.50763.1.S1_at--971--91Chr03:17217650..17217674 (25 bp)
ATTCTTGCACAACCACCTAGTTTTA
LOC_Os03g30260
Os.50763.1.S1_at--1070--8171Chr03:17217563..17217587 (25 bp)
GGAAGTTTAGGGTGTGCTCTTGCAT
LOC_Os03g30260
Os.50763.1.S1_at--238--3171Chr03:17217427..17217451 (25 bp)
AATTGAGAACCCCAAGTCCCAACAT
LOC_Os03g30260
Os.50763.1.S1_at--341--2991Chr03:17217388..17217412 (25 bp)
AATGTTTGCCATCTCATCTGATTGC
LOC_Os03g30260
Target Sequence 
GAAATGTCCAATCCGAGCTTCTATTCCGGAAGGACCGGTCAACCTTCACCTTTGACAAGGGTTGGGCTTTTCCAAGGCGC
ATATACTTCAATGGCGAAAGTTGTGTCATGCCTTCACCAGATCTGTACCCATGGTTACCCCCCTCTTCTACTCCTAGATT
TAGGACTGTATTCCTTCTCATGTCATTCCTGGTTTGTGGAACATTAGCATTCTTGCACAACCACCTAGTTTTAGACAAAA
ACTGTGGAAAGTGCTGACCACATTGGGCATTGGCTGTTGACATACTGAGTCTTTTGGAAGTTTAGGGTGTGCTCTTGCAT
GAAAAGCTAATTCGCGTTTGATTTAGGTTGTAAGTTTAGGTTCCTCGAAATCATTAAAGTTTGGGTTGTACATTCTGATG
GTGTGTATTCTTGGTCTGAAGTGTGAAGACTAATTGAGAACCCCAAGTCCCAACATTAATTGTCTAGAGAAATGTTTGCC
ATCTCATCTGATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis